halophFGD

Basic Information

Locus ID: Ag3G02197

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: exonuclease

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	233121384	233125689	-	Ag3G02197

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.53	64,912.43 Da	42.66	87.65	-0.29

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09901	H3TH_FEN1-like	225	295	1.75945E-27	-
CDD	cd09857	PIN_EXO1	1	209	1.31502E-119	IPR044752
Pfam	PF00867	XPG I-region	142	235	2.9E-17	IPR006086
Pfam	PF00752	XPG N-terminal domain	1	100	1.2E-20	IPR006085
SUPERFAMILY	SSF88723	PIN domain-like	2	235	1.1E-61	IPR029060
SUPERFAMILY	SSF47807	5' to 3' exonuclease, C-terminal subdomain	221	349	5.08E-23	IPR036279
Gene3D	G3DSA:3.40.50.1010	-	1	212	2.4E-72	-
Gene3D	G3DSA:1.10.150.20	-	218	291	1.9E-20	-
SMART	SM00279	HhH_4	222	255	0.0012	IPR008918
SMART	SM00485	xpgn3	1	102	1.6E-28	IPR006085
SMART	SM00484	xpgineu	141	213	1.9E-15	IPR006086
ProSitePatterns	PS00842	XPG protein signature 2.	144	158	-	IPR019974
PRINTS	PR00853	Xeroderma pigmentosum group G/yeast RAD superfamily signature	76	95	2.0E-21	IPR006084
PRINTS	PR00853	Xeroderma pigmentosum group G/yeast RAD superfamily signature	24	38	2.0E-21	IPR006084
PRINTS	PR00853	Xeroderma pigmentosum group G/yeast RAD superfamily signature	140	157	2.0E-21	IPR006084
PRINTS	PR00853	Xeroderma pigmentosum group G/yeast RAD superfamily signature	225	240	2.0E-21	IPR006084

Gene Ontology

Molecular Function:

GO:0003677 (DNA binding) GO:0003824 (catalytic activity) GO:0004518 (nuclease activity) GO:0016788 (hydrolase activity, acting on ester bonds) GO:0046872 (metal ion binding)

KEGG Pathway

KO Term:

K10746 (exonuclease 1 [EC:3.1.-.-])

Pathway:

ko03430 (Mismatch repair) map03430 (Mismatch repair)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G18090.1	5'-3' exonuclease family protein.
RefSeq	XP_017246442.1	PREDICTED: exonuclease 1 [Daucus carota subsp. sativus]
Swiss-Prot	Q8L6Z7	Exonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=EXO1 PE=2 SV=2
TrEMBL	A0A165X675	Exonuclease 1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014772 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.27734	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.168198	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	4.016715	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	3.602495	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	3.813497	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	2.227102	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.781224	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	2.07802	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.044703	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.204411	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.117971	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.162367	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.010686	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.571789	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.174995	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.412277	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.117361	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.168629	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.299819	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.359072	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.499719		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.01394	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.033287	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.080123	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.041587	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.475366	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.945508	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.830624	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg20690
Aizoaceae	Mesembryanthemum crystallinum	2	gene_20050, gene_505
Amaranthaceae	Atriplex hortensis	2	Ah002274, Ah016724
Amaranthaceae	Beta vulgaris	1	BVRB_5g111960
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg32200, Sbi_jg40297, Sbi_jg40298, Sbi_jg50288 ... Sbi_jg50289, Sbi_jg57200, Sbi_jg57201
Amaranthaceae	Salicornia europaea	3	Seu_jg1878, Seu_jg1879, Seu_jg24935
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00011460, GOSA_00011461, GOSA_00022191
Amaranthaceae	Suaeda glauca	4	Sgl41672, Sgl53980, Sgl59308, Sgl59309
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000011281, gene:ENSEOMG00000020426 ... gene:ENSEOMG00000026564, gene:ENSEOMG00000034657
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.5AG0014790, CQ.Regalona.r1.5BG0015830 ... CQ.Regalona.r1.8AG0008230, CQ.Regalona.r1.8BG0008830
Anacardiaceae	Pistacia vera	3	pistato.v30071070, pistato.v30150210, pistato.v30287190
Apiaceae	Apium graveolens	12	Ag10G01426, Ag11G04921, Ag3G01237, Ag3G02197, Ag4G00416 ... Ag4G00424, Ag4G01210, Ag5G00229, Ag7G00855, Ag7G00856, Ag7G00857, AgUnG00035
Arecaceae	Cocos nucifera	2	COCNU_03G009330, COCNU_06G013420
Arecaceae	Phoenix dactylifera	4	gene-LOC103710190, gene-LOC103722980, gene-LOC108510706 ... gene-LOC120113019
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.2925.V1.1, AsparagusV1_03.1965.V1.1 ... AsparagusV1_03.1966.V1.1, AsparagusV1_Unassigned.777.V1.1
Asteraceae	Flaveria trinervia	1	Ftri15G08729
Brassicaceae	Arabidopsis thaliana	2	AT1G18090.1, AT1G29630.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10006968m.g.v1.0, Thhalv10007197m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g16110.v2.2, Sp1g25530.v2.2
Brassicaceae	Brassica nigra	2	BniB03g007450.2N, BniB03g033970.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G2861, Ceq04G0457
Casuarinaceae	Casuarina glauca	2	Cgl03G3009, Cgl04G0557
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno09g05360, gene.Cymno11g02120
Dunaliellaceae	Dunaliella salina	2	Dusal.0215s00010.v1.0, Dusal.0832s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate06g12260, gene.Thate09g05980
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-4722
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG12.732, evm.TU.LG12.733
Plantaginaceae	Plantago ovata	2	Pov_00004823, Pov_00018645
Plumbaginaceae	Limonium bicolor	4	Lb3G16525, Lb3G19778, Lb3G19807, Lb5G27171
Poaceae	Echinochloa crus-galli	6	AH02.3468, AH05.539, BH02.3484, BH05.590, CH02.3030 ... CH05.674
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0035490, gene-QOZ80_1BG0085630 ... gene-QOZ80_5AG0386810, gene-QOZ80_5BG0434000
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0293210.1, HORVU.MOREX.r3.7HG0712230.1
Poaceae	Lolium multiflorum	4	gene-QYE76_018823, gene-QYE76_027205, gene-QYE76_027206 ... gene-QYE76_056155
Poaceae	Oryza coarctata	2	Oco01G021760, Oco02G022350
Poaceae	Oryza sativa	1	LOC_Os01g56940.1
Poaceae	Paspalum vaginatum	1	gene-BS78_03G295000
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0601613, Pt_Chr0702355
Poaceae	Sporobolus alterniflorus	4	Chr02G008110, Chr03G017490, Chr05G025410, Chr08G017420
Poaceae	Thinopyrum elongatum	2	Tel3E01G509200, Tel7E01G589600
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG045920, gene_TRIDC3BG052050 ... gene_TRIDC5BG036800, gene_TRIDC6AG061180, gene_TRIDC7AG047070, gene_TRIDC7BG040640
Poaceae	Triticum aestivum	6	TraesCS3A02G319700.1, TraesCS3B02G346600.1 ... TraesCS3D02G311400.1, TraesCS7A02G335200.1, TraesCS7B02G245900.2, TraesCS7D02G342700.1
Poaceae	Zea mays	1	Zm00001eb151620_P001
Poaceae	Zoysia japonica	3	nbis-gene-12382, nbis-gene-31240, nbis-gene-54145
Poaceae	Zoysia macrostachya	1	Zma_g25682
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.2248, evm.TU.LG04.1599, evm.TU.LG10.1310 ... evm.TU.LG10.1311, evm.TU.LG10.1312, evm.TU.LG14.1421
Posidoniaceae	Posidonia oceanica	2	gene.Posoc04g03600, gene.Posoc04g11620
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_13_RagTag.435, evm.TU.Scaffold_4_RagTag.714
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-28643, nbisL1-mrna-30688
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-1766, nbisL1-mrna-3232
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-1652, nbisL1-mrna-22066
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000015l.87, evm.TU.utg000008l.463 ... evm.TU.utg000015l.222
Rhizophoraceae	Kandelia obovata	2	Maker00000162, Maker00015623
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-14441, nbisL1-mrna-4129, nbisL1-mrna-4130
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-19210, nbisL1-mrna-19211, nbisL1-mrna-22193 ... nbisL1-mrna-24872
Salicaceae	Populus euphratica	2	populus_peu17956, populus_peu28283
Solanaceae	Lycium barbarum	2	gene-LOC132623942, gene-LOC132633238
Solanaceae	Solanum chilense	2	SOLCI000442800, SOLCI004832200
Solanaceae	Solanum pennellii	2	gene-LOC107009082, gene-LOC107012887
Tamaricaceae	Reaumuria soongarica	3	STRG.28176_chr04_+, gene_12651, gene_5806
Tamaricaceae	Tamarix chinensis	2	TC02G2829, TC05G1039
Zosteraceae	Zostera marina	2	Zosma03g01610.v3.1, Zosma06g09840.v3.1