Basic Information
Locus ID:
Ag3G02196
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 232945719 | 232957614 | + | Ag3G02196 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 66,180.57 Da | 31.08 | 87.01 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 49 | 349 | 1.43915E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 574 | 603 | 0.24 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 230 | 260 | 1.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 532 | 560 | 0.0027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 185 | 210 | 0.023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 50 | 84 | 3.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 176 | 560 | 1.15E-52 | IPR036322 |
| SUPERFAMILY | SSF101908 | Putative isomerase YbhE | 22 | 219 | 2.35E-25 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 339 | 2.3E-185 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 8 | 605 | 2.3E-185 | IPR015943 |
| SMART | SM00320 | WD40_4 | 267 | 309 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 219 | 261 | 3.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 523 | 561 | 2.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 565 | 604 | 0.085 | IPR001680 |
| SMART | SM00320 | WD40_4 | 479 | 518 | 1.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 177 | 216 | 7.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 436 | 474 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 134 | 174 | 4.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 313 | 353 | 0.046 | IPR001680 |
| SMART | SM00320 | WD40_4 | 46 | 85 | 5.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 133 | 3.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 573 | 609 | 9.678328 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 486 | 518 | 10.842632 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 486 | 518 | 9.09833 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 573 | 609 | 9.906923 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 229 | 260 | 13.282162 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 529 | 562 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 53 | 84 | 9.940341 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 229 | 260 | 11.022865 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18060.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_017247494.1 | PREDICTED: actin-interacting protein 1-2-like [Daucus carota subsp. sativus] | 0 |
| Q9LV35 | Actin-interacting protein 1-2 OS=Arabidopsis thaliana OX=3702 GN=AIP1-2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A165X693 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 50.772312 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 20.592457 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 37.413025 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 40.467396 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 40.01075 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 35.5368 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 34.154064 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 25.63793 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 28.774343 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 25.973373 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 29.415548 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 31.169836 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 27.93368 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 24.563503 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 34.489712 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 46.327564 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 46.77787 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 54.999111 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 51.403545 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 46.585663 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 42.092503 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 50.119598 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 47.742393 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 49.971367 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 59.111038 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 47.92374 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 49.181427 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 51.301186 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 50.320869 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 38.413754 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 75.633881 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 64.984543 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 58.82127 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 37.676987 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 52.747036 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 45.322773 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 48.377087 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 45.816128 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 74.794823 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 46.860523 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 33.885345 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 75.966003 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 56.969429 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 90.583298 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 109.181831 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 95.637352 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 86.143539 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 49.211258 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 48.804638 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 55.205429 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27003 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18574 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025366 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g142710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12911, Sbi_jg52955 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8902 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023461 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl31060, Sgl36432 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001482, gene:ENSEOMG00000001942 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0012400, CQ.Regalona.r1.6BG0013000 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30150180, pistato.v30216710, pistato.v30216990 |
| Apiaceae | Apium graveolens | 3 | Ag3G02196, Ag7G01231, Ag9G02820 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G005740, COCNU_03G009290 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696946, gene-LOC103718996 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G32192 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G01330.1, AT3G18060.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000821m.g.v1.0, Thhalv10020321m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g12780.v2.2, Sp3g16180.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g046530.2N, BniB04g014820.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2859 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G3006 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g14440 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g20160 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.13 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00033251 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G36913, Lb0G37557, Lb2G13245 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1254, BH02.838, CH02.956 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0007980, gene-QOZ80_1BG0056760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0222780.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_049136 |
| Poaceae | Oryza coarctata | 2 | Oco01G000970, Oco02G001000 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g03510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G081000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205513, Pt_Chr0206978 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G024520, Chr03G003360, Chr05G002430, Chr20G008630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G060700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG005380, gene_TRIDC3BG004980 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G047800.1, TraesCS3B02G034400.1 ... |
| Poaceae | Zea mays | 8 | Zm00001eb076360_P001, Zm00001eb125700_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7093 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9879 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.802, evm.TU.LG21.477 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g21510, gene.Posoc04g21560 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.732 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14401 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14439 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12347 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000061l.18 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008891 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14443, nbisL1-mrna-934 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-24870, nbisL1-mrna-8406 |
| Salicaceae | Populus euphratica | 2 | populus_peu28281, populus_peu29733 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633242 |
| Solanaceae | Solanum chilense | 1 | SOLCI000442600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014336 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.9226_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0994 |
| Zosteraceae | Zostera marina | 1 | Zosma04g19370.v3.1 |