Basic Information
Locus ID:
Ag3G02191
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Vacuolar protein-sorting-associated protein 11 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 232230212 | 232241057 | + | Ag3G02191 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 106,988.39 Da | 43.59 | 91.27 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16688 | RING-H2_Vps11 | 850 | 890 | 1.39321E-20 | - |
| Pfam | PF12451 | Vacuolar protein sorting protein 11 C terminal | 892 | 934 | 2.8E-12 | IPR024763 |
| Pfam | PF00637 | Region in Clathrin and VPS | 402 | 522 | 2.7E-14 | IPR000547 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 25 | 287 | 1.62E-12 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 19 | 307 | 1.2E-6 | IPR015943 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 340 | 625 | 2.4E-7 | IPR011990 |
| PIRSF | PIRSF007860 | Vps11 | 552 | 941 | 3.0E-108 | IPR016528 |
| PIRSF | PIRSF007860 | Vps11 | 1 | 568 | 1.7E-180 | IPR016528 |
| ProSiteProfiles | PS50236 | Clathrin heavy-chain (CHCR) repeat profile. | 561 | 766 | 10.431691 | IPR000547 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 852 | 887 | 9.287877 | IPR001841 |
| ProSiteProfiles | PS50236 | Clathrin heavy-chain (CHCR) repeat profile. | 394 | 543 | 27.476898 | IPR000547 |
| Coils | Coil | Coil | 809 | 829 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G05170.1 | vacuolar protein sorting 11. Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis. | 0 |
| RefSeq | XP_017223543.1 | PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Daucus carota subsp. sativus] | 0 |
| Q9SJ40 | Vacuolar protein-sorting-associated protein 11 homolog OS=Arabidopsis thaliana OX=3702 GN=VPS11 PE=1 SV=1 | 0 | |
| TrEMBL | A0A162ADW9 | Vacuolar protein sorting-associated protein 11 homolog OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012906 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.211125 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.213098 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.738968 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.631985 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.766966 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.661032 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.918335 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.059683 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.346025 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.417419 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 20.038435 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 15.440894 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 18.068928 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.474103 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.414885 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.951754 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.16556 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.897626 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.734285 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.791897 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.77668 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.880893 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.93514 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.810148 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.766369 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.528179 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.281617 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.729093 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.495156 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.628269 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.713195 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.646778 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.856074 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.524703 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.785912 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.552182 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.116106 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.403039 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.854432 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.136801 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.575525 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.835779 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.170501 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 8.900229 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 9.095233 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.007793 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.62369 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.327099 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 16.321617 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.65468 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19084 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5519 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028612 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg26813, Sbi_jg33752, Sbi_jg33753 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8445 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011693 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73551, Sgl77072 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000005084, gene:ENSEOMG00000036042 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0007630, CQ.Regalona.r1.9BG0007690 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30017230 |
| Apiaceae | Apium graveolens | 2 | Ag3G00028, Ag3G02191 |
| Arecaceae | Cocos nucifera | 3 | COCNU_05G005340, COCNU_13G003490, COCNU_13G003540 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC120104977, gene-LOC120108245 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2265.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G12822 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G05170.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002393m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g23690.v2.2, SpUn0142_0010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g033770.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0049 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno10g06620, gene.Cymno14g09200 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g13880 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2237 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031814 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19638 |
| Poaceae | Echinochloa crus-galli | 4 | AH06.2764, BH06.2554, CH06.2855, CH09.850 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0320570, gene-QOZ80_4BG0351970 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0162070.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_043550 |
| Poaceae | Oryza coarctata | 2 | Oco07G003870, Oco08G004070 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g31390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G065600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0303039, Pt_Chr0405899 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G015010, Chr26G004800 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G504700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG040800, gene_TRIDC2BG043770 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G282100.1, TraesCS2B02G299300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb420950_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-44913, nbis-gene-7896 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21145 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.208, evm.TU.LG24.446 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g19030 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1617 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12103 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1253 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10900 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.929 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013249 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10459 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15551 |
| Salicaceae | Populus euphratica | 2 | populus_peu26903, populus_peu26913 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644226 |
| Solanaceae | Solanum chilense | 1 | SOLCI004826100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023204 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_151 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G0186, TC09G0733 |
| Zosteraceae | Zostera marina | 1 | Zosma05g02070.v3.1 |