Basic Information
Locus ID:
Ag3G02116
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 218732048 | 218733089 | - | Ag3G02116 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 24,044.56 Da | 31.66 | 84.54 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04476 | RPA1_DBD_C | 43 | 175 | 5.22723E-24 | IPR013955 |
| Pfam | PF08646 | Replication factor-A C terminal domain | 60 | 193 | 2.5E-19 | IPR013955 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 41 | 187 | 3.08E-27 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 26 | 207 | 1.6E-37 | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017239624.1 | PREDICTED: replication protein A 70 kDa DNA-binding subunit C-like [Daucus carota subsp. sativus] | 0 |
| Q10Q08 | Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A164U7T1 | Replication protein A subunit OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025622 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|
Orthology