Basic Information
Locus ID:
Ag3G02088
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Trm112p-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 214120966 | 214128052 | - | Ag3G02088 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 8,891.04 Da | 32.91 | 102.02 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03966 | Trm112p-like protein | 15 | 53 | 4.1E-5 | IPR005651 |
| SUPERFAMILY | SSF158997 | Trm112p-like | 13 | 66 | 3.14E-15 | - |
| Gene3D | G3DSA:2.20.25.10 | - | 20 | 71 | 2.2E-15 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 84 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35905.1 | 0 | |
| RefSeq | XP_017240535.1 | PREDICTED: protein preY, mitochondrial isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q5M8Z2 | Protein preY, mitochondrial OS=Xenopus tropicalis OX=8364 GN=pyurf PE=2 SV=1 | 0 | |
| TrEMBL | A0A166BTL7 | UPF0434 protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011610 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 41.494766 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 23.723251 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.588419 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.620378 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.126096 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.415141 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 12.768523 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.22066 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 5.650239 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.797729 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 8.998617 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 6.682543 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.418704 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.717225 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 44.861668 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 23.342752 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 43.864525 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 29.860796 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 23.353559 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 24.238487 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 32.555691 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 54.851685 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 59.554688 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 39.357395 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 27.565308 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 29.127682 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 37.365761 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 23.092457 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 45.112793 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 12.281202 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 20.796118 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 17.858255 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 21.434004 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 22.415812 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 21.159748 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 22.486025 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 17.923964 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 19.493841 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.361897 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.660099 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 15.799067 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 13.281654 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 33.867188 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 18.073952 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 35.024044 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 15.852374 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 34.11338 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 49.058605 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 51.487423 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 48.600788 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37371 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24139 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027241 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g134250 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12624, Sbi_jg53316 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8607 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010406 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl33638 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001555, gene:ENSEOMG00000003205 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0023400, CQ.Regalona.r1.6BG0024780 |
| Apiaceae | Apium graveolens | 1 | Ag3G02088 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G002710, COCNU_10G001870 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103719591, gene-LOC103721142 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G12331 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G35905.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026722m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g33690.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g087740.2N, BniB05g002620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0125 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0136 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g06240 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g19000 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.54, evm.TU.LG02.2807 |
| Poaceae | Echinochloa crus-galli | 5 | AH01.1946, AH01.1947, BH01.2290, BH01.2293, CH01.2393 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_017055 |
| Poaceae | Oryza coarctata | 2 | Oco19G004860, Oco20G004750 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g30300.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G225700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G013840, Chr13G015310 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G254100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG020070, gene_TRIDC1BG025410 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G135800.1, TraesCS1B02G156400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb222710_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-57141 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16093 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG05.316, evm.TU.LG24.915, evm.TU.LG25.996 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g09100 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.72 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-208, nbisL1-mrna-209, nbisL1-mrna-78 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14337 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5873 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.1172 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006810 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616988 |
| Solanaceae | Solanum chilense | 1 | SOLCI002043500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012224 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16269 |