halophFGD

Basic Information

Locus ID: Ag3G02085

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Calcium and calcium calmodulin-dependent serine threonine-protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	213825455	213827969	-	Ag3G02085

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.46	56,955.41 Da	44.05	91.02	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd05117	STKc_CAMK	12	293	1.72587E-115	-
CDD	cd00051	EFh	395	454	3.0783E-8	IPR002048
CDD	cd00051	EFh	429	496	8.57313E-14	IPR002048
Pfam	PF00069	Protein kinase domain	12	294	1.0E-60	IPR000719
Pfam	PF13202	EF hand	397	412	0.039	IPR002048
Pfam	PF13499	EF-hand domain pair	427	496	8.1E-14	IPR002048
SUPERFAMILY	SSF47473	EF-hand	339	503	3.02E-32	IPR011992
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	4	302	3.64E-77	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	2	111	2.9E-15	-
Gene3D	G3DSA:1.10.238.10	-	313	506	2.4E-38	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	112	312	1.1E-57	-
SMART	SM00220	serkin_6	12	294	1.9E-87	IPR000719
SMART	SM00054	efh_1	428	456	3.0E-4	IPR002048
SMART	SM00054	efh_1	470	498	2.7E-7	IPR002048
SMART	SM00054	efh_1	392	420	1.4	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	424	459	13.537066	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	388	423	9.045907	IPR002048
ProSiteProfiles	PS50011	Protein kinase domain profile.	12	294	46.816769	IPR000719
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	466	501	14.5413	IPR002048
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	155	167	-	IPR008271
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	401	413	-	IPR018247
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	437	449	-	IPR018247
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	18	45	-	IPR017441
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	479	491	-	IPR018247

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005509 (calcium ion binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K08794 (calcium/calmodulin-dependent protein kinase I [EC:2.7.11.17])

Best hit

Source	Best Hit ID	Description
TAIR	AT4G04720.1	calcium-dependent protein kinase 21. member of Calcium Dependent Protein Kinase
RefSeq	XP_017257014.1	PREDICTED: calcium and calcium/calmodulin-dependent serine/threonine-protein kinase-like [Daucus carota subsp. sativus]
Swiss-Prot	A0AAR7	Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase OS=Lotus japonicus OX=34305 GN=CCAMK PE=1 SV=1
TrEMBL	A0A161XA78	Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023134 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.411191	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.732921	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.224729	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.406229	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.287318	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.337186	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.26828	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	2.199555	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.693346	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	3.29068	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	2.83466	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.376353	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	2.03089	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.624846	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.164761	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.262532	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.410593	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.084879	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	3.475941	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	5.882728	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.105566	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.254461	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.351098	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.364048	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.648676	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.278718	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.020067	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.265966	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.565331		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.320864		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.519102		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	7.073513		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	3.885323		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	9.398289		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	7.486416		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.803999		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	4.289355		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.476937	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.966415	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.26471	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	4.933738	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	4.319083	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	4.070422	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	3.645106	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	4.003019	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	4.880358	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	2.244517	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.179894	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.046031	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Anacardiaceae	Pistacia vera	1	pistato.v30168840
Apiaceae	Apium graveolens	1	Ag3G02085
Arecaceae	Cocos nucifera	2	COCNU_04G005670, COCNU_04G005700
Arecaceae	Phoenix dactylifera	1	gene-LOC103709055
Asparagaceae	Asparagus officinalis	1	AsparagusV1_02.1301.V1.1
Asteraceae	Flaveria trinervia	1	Ftri18G25598
Casuarinaceae	Casuarina equisetifolia	1	Ceq08G1578
Casuarinaceae	Casuarina glauca	1	Cgl08G1608
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG02.1013
Plantaginaceae	Plantago ovata	2	Pov_00006959, Pov_00014745
Poaceae	Echinochloa crus-galli	3	AH05.1968, BH05.2092, CH05.2164
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_5AG0368830, gene-QOZ80_5BG0416380
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.1HG0069960.1
Poaceae	Lolium multiflorum	1	gene-QYE76_013966
Poaceae	Oryza coarctata	2	Oco09G012740, Oco10G012820
Poaceae	Oryza sativa	1	LOC_Os05g41090.1
Poaceae	Paspalum vaginatum	1	gene-BS78_06G240800
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0504440, Pt_Chr0504501
Poaceae	Sporobolus alterniflorus	2	Chr18G012590, Chr22G005170
Poaceae	Thinopyrum elongatum	1	Tel1E01G495900
Poaceae	Triticum dicoccoides	2	gene_TRIDC1AG045650, gene_TRIDC1BG051680
Poaceae	Triticum aestivum	3	TraesCS1A02G307200.1, TraesCS1B02G318000.1 ... TraesCS1D02G306600.1
Poaceae	Zea mays	2	Zm00001eb200350_P004, Zm00001eb306730_P002
Poaceae	Zoysia japonica	1	nbis-gene-25330
Poaceae	Zoysia macrostachya	1	Zma_g28476
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g28890
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_1_RagTag.1112
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-6503
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-20877
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-21100
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000016l.840
Rhizophoraceae	Kandelia obovata	1	Maker00017089
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-11027, nbisL1-mrna-21129, nbisL1-mrna-21130
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-13317
Salicaceae	Populus euphratica	2	populus_peu06012, populus_peu19879
Solanaceae	Lycium barbarum	1	gene-LOC132645338
Solanaceae	Solanum chilense	1	SOLCI001256100
Solanaceae	Solanum pennellii	1	gene-LOC107028598