Basic Information
Locus ID:
Ag3G02070
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein strawberry notch
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 210679207 | 210690839 | - | Ag3G02070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 122,759.08 Da | 51.98 | 88.34 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 554 | 601 | 4.8E-7 | IPR019787 |
| Pfam | PF13871 | C-terminal domain on Strawberry notch homologue | 643 | 920 | 5.5E-106 | IPR026937 |
| Pfam | PF13872 | P-loop containing NTP hydrolase pore-1 | 168 | 375 | 2.6E-85 | IPR039187 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 545 | 605 | 1.79E-11 | IPR011011 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 698 | 803 | 1.44E-6 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 213 | 318 | 2.42E-5 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 537 | 626 | 1.9E-10 | IPR013083 |
| SMART | SM00249 | PHD_3 | 554 | 600 | 1.4E-5 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 552 | 602 | 8.7691 | IPR019787 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 102 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79350.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_017244073.1 | PREDICTED: protein strawberry notch homolog 1-like [Daucus carota subsp. sativus] | 0 |
| F4IF36 | Protein FORGETTER 1 OS=Arabidopsis thaliana OX=3702 GN=FGT1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8S0VEX2 | Strawberry notch isoform X1 OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A001220 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.606445 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.449005 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.661089 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.17862 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.401209 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.578427 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.721731 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.730223 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 6.271291 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 5.381329 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 6.393995 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.929626 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 5.177465 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 4.377134 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.051997 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.143932 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.273402 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.229929 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.319385 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.555802 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.286442 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.499103 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.754139 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.567396 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.838339 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.109916 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.61561 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.829674 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.666205 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.102852 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.147702 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.707347 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.066525 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.952778 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.057868 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.62938 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.425261 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.360433 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.302852 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.647661 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.242628 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.017932 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 3.456502 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.968844 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21731 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12755 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah033845, Ah033846 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g038380 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19564, Sbi_jg44126 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17855 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00024011 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl64809, Sgl69270 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000014338, gene:ENSEOMG00000017128 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0010250, CQ.Regalona.r1.2BG0010200 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30180190 |
| Apiaceae | Apium graveolens | 3 | Ag2G01403, Ag3G02070, Ag3G02071 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G007600, COCNU_04G007610 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708025 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.164.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G02445 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G79350.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000653m.g.v1.0, Thhalv10018021m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g34410.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g067720.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1689, Ceq03G1697 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1815 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g02640 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0166s00008.v1.0, Dusal.0166s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g00300 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2989, evm.TU.LG01.2991 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039188 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G00467, Lb1G00470 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.673, AH09.2249, CH08.799 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_4AG0304550, gene-QOZ80_4BG0335420 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0191950.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_033058, gene-QYE76_046228 |
| Poaceae | Oryza coarctata | 3 | Oco07G015590, Oco15G004280, Oco16G004030 |
| Poaceae | Oryza sativa | 3 | LOC_Os04g52020.1, LOC_Os04g52030.1, LOC_Os08g12680.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G132500, gene-BS78_06G222700 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0301328 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr20G010190, Chr25G003420, Chr29G009800, Chr30G003420 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G727900, Tel7E01G688100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG061670, gene_TRIDC2BG065490 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G428300.8, TraesCS2D02G426400.7 ... |
| Poaceae | Zea mays | 2 | Zm00001eb413950_P001, Zm00001eb430630_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5811 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g21945, Zma_g23784 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2501, evm.TU.LG06.1856, evm.TU.LG08.6 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g07950 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.24 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10382 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4160 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10732 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.16 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013295 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9329 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6853 |
| Salicaceae | Populus euphratica | 2 | populus_peu06672, populus_peu20560 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627389 |
| Solanaceae | Solanum chilense | 1 | SOLCI003315200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002313 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5944 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3598 |
| Zosteraceae | Zostera marina | 1 | Zosma05g20810.v3.1 |