Basic Information
Locus ID:
Ag3G02053
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 206913320 | 206920381 | + | Ag3G02053 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 85,993.56 Da | 45.02 | 68.47 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00855 | PWWP domain | 16 | 98 | 1.3E-9 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 15 | 122 | 7.82E-10 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 8 | 126 | 9.1E-10 | - |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 17 | 72 | 10.124414 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 452 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03140.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_017246786.1 | PREDICTED: uncharacterized protein At1g51745-like [Daucus carota subsp. sativus] | 0 |
| P59278 | Uncharacterized protein At1g51745 OS=Arabidopsis thaliana OX=3702 GN=At1g51745 PE=2 SV=2 | 0 | |
| TrEMBL | A0A165XDV0 | PWWP domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 29.753639 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 24.970377 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 49.624901 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 44.933331 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 38.481583 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 61.450867 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 43.391682 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 95.776337 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 19.439651 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 19.174932 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 20.282442 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.485582 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 20.801052 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 15.621971 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.634275 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.713889 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.35884 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.376513 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.066165 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.938841 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.993725 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.501038 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.955978 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.030593 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.237101 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.536335 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.930048 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.366184 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.495251 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.857302 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.61946 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.709435 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.035163 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.413814 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.605445 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.703883 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.462586 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.471563 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.093513 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.2026 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.469154 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 10.384033 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 9.067874 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 10.95128 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 8.72322 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 9.020066 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 10.918061 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.018429 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.430942 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.929628 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2069 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3431 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018387 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g050070 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14868, Sbi_jg55644 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26199 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017943 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01109, Sgl06194 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002781, gene:ENSEOMG00000029997 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0007170, CQ.Regalona.r1.3BG0007180 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30100260, pistato.v30291820 |
| Apiaceae | Apium graveolens | 2 | Ag2G02154, Ag3G02053 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G015290, COCNU_10G009480, COCNU_10G009490 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103703817, gene-LOC103714526, gene-LOC120109527 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.927.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G00883 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G03140.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020126m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02180.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g061690.2N, BniB07g060800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1936 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2117 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g00850, gene.Cymno18g05270 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g22260, gene.Thate09g04280, gene.Thate09g04290 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-8028, nbisL1-mrna-8029 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1788 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00012873, Pov_00032480, Pov_00032481, Pov_00041264 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G02579, Lb5G26875 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3114, BH07.2938, CH07.3016 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2BG0197620 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0194200.1, HORVU.MOREX.r3.6HG0606490.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_024595, gene-QYE76_046106 |
| Poaceae | Oryza coarctata | 4 | Oco03G019020, Oco04G019780, Oco07G014850, Oco08G014340 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g47170.1, LOC_Os04g51060.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G244300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0203880, Pt_Chr0301464, Pt_Chr0301503 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G004430, Chr09G022650, Chr15G005840 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G747500, Tel6E01G494800 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG063490, gene_TRIDC2BG067530 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G442800.1, TraesCS2B02G463900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb188160_P001, Zm00001eb251630_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-9029 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14202 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.647, evm.TU.LG04.125 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g01570 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.592, evm.TU.Scaffold_2_RagTag.1683 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3514, nbisL1-mrna-7581 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-4940, nbisL1-mrna-5660 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13989, nbisL1-mrna-5601 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.291 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005430, Maker00011474 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2724, nbisL1-mrna-8450 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16744, nbisL1-mrna-699 |
| Salicaceae | Populus euphratica | 2 | populus_peu16213, populus_peu19327 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132602793, gene-LOC132632228 |
| Solanaceae | Solanum chilense | 2 | SOLCI000095200, SOLCI001335200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014780, gene-LOC107021107 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_3935, gene_9913 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G2787, TC08G1073 |
| Zosteraceae | Zostera marina | 2 | Zosma02g02510.v3.1, Zosma06g02290.v3.1 |