Basic Information
Locus ID:
Ag3G02051
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 206722316 | 206734350 | + | Ag3G02051 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.90 | 148,525.55 Da | 46.97 | 104.71 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14002 | STKc_STK36 | 4 | 256 | 0.0 | - |
| Pfam | PF02985 | HEAT repeat | 1148 | 1177 | 0.0016 | IPR000357 |
| Pfam | PF00069 | Protein kinase domain | 6 | 256 | 4.2E-78 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 4 | 333 | 1.89E-91 | IPR011009 |
| SUPERFAMILY | SSF48371 | ARM repeat | 1050 | 1353 | 1.61E-34 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 1066 | 1352 | 1.1E-34 | IPR011989 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 2 | 324 | 9.8E-94 | - |
| SMART | SM00220 | serkin_6 | 6 | 256 | 5.1E-105 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 6 | 256 | 53.021595 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 123 | 135 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 12 | 39 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 339 | - | - |
| Coils | Coil | Coil | 1224 | 1244 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50240.2 | Protein kinase family protein with ARM repeat domain. The FUSED (FU) gene belongs to Ser/Thr protein kinase family and has a key role in the hedgehog signaling pathway known to control cell proliferation and patterning in fruit flies and humans . Arabidopsis thaliana genome has a single Fu gene. Cytokinesis-defective mutants, which we named two-in-one (tio), result from mutations in Arabidopsis Fu. Phenotypic analysis of tio mutants reveals an essential role for TIO in conventional modes of cytokinesis in plant meristems and during male gametogenesis. TIO is tightly localized to the midline of the nascent phragmoplast and remains associated with the expanding phragmoplast ring. This gene was previously annotated as two gene models, AT1G50230.1 and AT1G50240.1, however the experimental evidence exists (Oh et al, Current Biology, 2005) showing that these two models are in fact single gene, named FUSED. | 0 |
| RefSeq | XP_017247987.1 | PREDICTED: serine/threonine-protein kinase TIO [Daucus carota subsp. sativus] | 0 |
| Q2QAV0 | Serine/threonine-protein kinase TIO OS=Arabidopsis thaliana OX=3702 GN=TIO PE=1 SV=1 | 0 | |
| TrEMBL | A0A165XDT0 | non-specific serine/threonine protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014574 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.037902 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.089707 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.447789 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.590729 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.922653 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.707318 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.289975 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.992109 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 42.443264 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 37.667549 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 45.625698 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 34.071495 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 31.088039 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 24.106277 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.064623 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.297011 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.612389 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.083855 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.935641 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.828017 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.25096 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.960419 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.621138 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 13.725204 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.173417 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.981587 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.122403 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.91269 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.943136 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.807472 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.451503 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.4052 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.211089 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.964686 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.028526 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.850941 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.449437 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.852498 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 29.253763 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.579042 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.655086 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 15.987102 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.170885 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.723244 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 7.478239 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 13.901228 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 26.418623 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 14.986451 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.572749 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.552721 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34288 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_16227, gene_19063, gene_20899 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah018627, Ah030779, Ah031451 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g052030, BVRB_7g157410 |
| Amaranthaceae | Salicornia bigelovii | 10 | Sbi_jg15087, Sbi_jg27291, Sbi_jg33244, Sbi_jg41872 ... |
| Amaranthaceae | Salicornia europaea | 5 | Seu_jg26397, Seu_jg27596, Seu_jg27597, Seu_jg7954 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020065 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl01343, Sgl06420, Sgl71355, Sgl71356, Sgl74949, Sgl74950 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000000165, gene:ENSEOMG00000044046 |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0005090, CQ.Regalona.r1.3BG0005110 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30098950, pistato.v30101130 |
| Apiaceae | Apium graveolens | 1 | Ag3G02051 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G004300 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704645 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1280.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G33559 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G50240.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011182m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g37070.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g031000.2N, BniB07g005040.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1059 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G1016, Cgl02G1017, Cgl02G1101 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g16220 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0307s00005.v1.0, Dusal.0307s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g33610 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10981 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1796 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00012859, Pov_00028682 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30046 |
| Poaceae | Echinochloa crus-galli | 5 | AH03.395, AH03.4127, BH03.4470, BH03.471, CH07.44 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_7BG0613680 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0109850.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_016888, gene-QYE76_038619 |
| Poaceae | Oryza coarctata | 2 | Oco24G005320, Oco24G005580 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g24550.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K140200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0305366 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr13G011840 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G206100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG010980, gene_TRIDC2BG013430 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G095300.1, TraesCS2B02G110500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb141360_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-33303 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5828 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.363, evm.TU.LG17.359 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g34870 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.594 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-7574, nbisL1-mrna-7578 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7522 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5604 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.356 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011400 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8446 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-702 |
| Salicaceae | Populus euphratica | 2 | populus_peu02313, populus_peu02320 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632230 |
| Solanaceae | Solanum chilense | 1 | SOLCI001335100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015407 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9911 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1241 |
| Zosteraceae | Zostera marina | 1 | Zosma05g27660.v3.1 |