Basic Information
Locus ID:
Ag3G02042
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
ORG1
Description:
plastid-lipid-associated protein 14, chloroplastic
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 203892395 | 203898582 | + | Ag3G02042 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 76,323.23 Da | 47.12 | 94.12 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04755 | PAP_fibrillin | 433 | 658 | 1.9E-6 | IPR006843 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 82 | 411 | 4.45E-18 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 225 | 402 | 1.9E-14 | - |
| SMART | SM00220 | serkin_6 | 89 | 400 | 6.9E-4 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 93 | 400 | 13.191982 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53450.1 | OBP3-responsive gene 1. | 0 |
| RefSeq | XP_017246959.1 | PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic [Daucus carota subsp. sativus] | 0 |
| Q9LV04 | Probable plastid-lipid-associated protein 14, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAP14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165XET0 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014541 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 23.934286 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 25.548019 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 21.746965 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 24.838253 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 22.608374 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 30.618357 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 20.509096 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 22.084726 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 32.53355 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 30.729231 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 33.166237 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 27.299479 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 26.862663 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 22.298462 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.19926 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 16.935369 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 14.551108 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 26.611296 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 52.309929 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.917864 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 22.642641 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.915491 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 12.323859 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 13.104198 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 24.349463 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 21.760157 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 23.388721 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 47.717899 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 48.162315 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 35.762016 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 39.995319 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 28.888044 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 68.192566 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 51.558987 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 68.387604 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 56.735699 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 30.882719 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 37.341679 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 13.2571 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 18.596586 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 33.067574 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 33.75164 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 36.610374 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 67.65831 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 61.640186 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 31.722446 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 57.527199 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 29.305439 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 63.096546 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 63.024227 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2195 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3297 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018644 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g052110 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15102, Sbi_jg55936 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26416 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020047 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl01368, Sgl06444, Sgl06445, Sgl06523 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003531, gene:ENSEOMG00000031170 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0004910, CQ.Regalona.r1.3BG0004940 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30185230 |
| Apiaceae | Apium graveolens | 1 | Ag3G02042 |
| Arecaceae | Cocos nucifera | 2 | contig68919142G000010, scaffold021278G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713333 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2832.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G33618 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G53450.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012882m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g15580.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g031780.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1609 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1745 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g12620 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g19400, gene.Thate07g15780 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11731 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2900 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010831 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G21013 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2571, BH02.2671, CH02.3860 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0027010, gene-QOZ80_1BG0077260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0276710.1 |
| Poaceae | Oryza coarctata | 2 | Oco01G016130, Oco02G016380 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g46720.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G215900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604999 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G013940, Chr05G019860 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G402100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG035500, gene_TRIDC3BG039880 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G237400.1, TraesCS3B02G266000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb158040_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29046 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8346 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1528, evm.TU.LG14.786 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g13750 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.854 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23775 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14121 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21587 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.122 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006352 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10634 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21917 |
| Salicaceae | Populus euphratica | 7 | populus_peu28058, populus_peu28059, populus_peu28061 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632068 |
| Solanaceae | Solanum chilense | 1 | SOLCI000802700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014389 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5262 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1516 |
| Zosteraceae | Zostera marina | 1 | Zosma01g14660.v3.1 |