Basic Information
Locus ID:
Ag3G02041
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
DNA recombination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 202873247 | 202877899 | + | Ag3G02041 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 34,419.73 Da | 38.22 | 102.58 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02721 | Domain of unknown function DUF223 | 34 | 112 | 8.7E-5 | IPR003871 |
| Gene3D | G3DSA:2.40.50.140 | - | 96 | 264 | 9.1E-17 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 8 | 93 | 6.2E-5 | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017256448.1 | PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A6L5B8X4 | DUF223 domain-containing protein (Fragment) OS=Apium graveolens OX=4045 GN=AG4045_005644 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 35 | Ag10G00978, Ag10G02928, Ag11G04457, Ag11G04458, Ag11G04459 ... |