Basic Information
Locus ID:
Ag3G02040
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX MLL subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 202762809 | 202772566 | + | Ag3G02040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 123,905.88 Da | 47.13 | 71.74 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15495 | PHD_ATX3_4_5_like | 655 | 701 | 8.93911E-21 | IPR042011 |
| CDD | cd15663 | ePHD_ATX3_4_5_like | 710 | 821 | 1.93023E-67 | IPR041955 |
| CDD | cd10518 | SET_SETD1-like | 929 | 1080 | 1.09313E-72 | - |
| CDD | cd15517 | PHD_TCF19_like | 464 | 514 | 1.42617E-9 | - |
| Pfam | PF13831 | PHD-finger | 668 | 702 | 4.8E-12 | - |
| Pfam | PF00855 | PWWP domain | 268 | 365 | 1.3E-13 | IPR000313 |
| Pfam | PF13832 | PHD-zinc-finger like domain | 709 | 821 | 5.5E-27 | - |
| Pfam | PF00856 | SET domain | 953 | 1058 | 3.0E-18 | IPR001214 |
| Pfam | PF00628 | PHD-finger | 463 | 516 | 1.2E-9 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 462 | 518 | 2.21E-10 | IPR011011 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 266 | 369 | 2.47E-17 | - |
| SUPERFAMILY | SSF82199 | SET domain | 931 | 1084 | 1.22E-42 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 653 | 718 | 3.1E-9 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 705 | 824 | 5.2E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 645 | 704 | 1.2E-10 | IPR013083 |
| Gene3D | G3DSA:2.170.270.10 | SET domain | 912 | 1084 | 5.4E-49 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 256 | 378 | 2.2E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 455 | 519 | 1.5E-10 | IPR013083 |
| SMART | SM00293 | PWWP_4 | 268 | 337 | 8.6E-4 | IPR000313 |
| SMART | SM00317 | set_7 | 942 | 1065 | 1.2E-36 | IPR001214 |
| SMART | SM00249 | PHD_3 | 463 | 515 | 5.6E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 766 | 822 | 0.017 | IPR001965 |
| SMART | SM00249 | PHD_3 | 655 | 702 | 0.0053 | IPR001965 |
| ProSiteProfiles | PS51566 | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 1 | 1084 | 428.095093 | IPR025780 |
| ProSiteProfiles | PS51805 | Extended PHD (ePHD) domain profile. | 707 | 822 | 31.02108 | IPR034732 |
| ProSiteProfiles | PS50868 | Post-SET domain profile. | 1068 | 1084 | 8.380535 | IPR003616 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 461 | 517 | 9.0005 | IPR019787 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 270 | 339 | 10.395212 | IPR000313 |
| ProSiteProfiles | PS50280 | SET domain profile. | 942 | 1059 | 19.111895 | IPR001214 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 656 | 701 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 130 | - | - |
| Coils | Coil | Coil | 88 | 120 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27910.1 | SET domain protein 16. | 0 |
| RefSeq | XP_017246957.1 | PREDICTED: histone-lysine N-methyltransferase ATX4-like [Daucus carota subsp. sativus] | 0 |
| Q9SUE7 | Histone-lysine N-methyltransferase ATX4 OS=Arabidopsis thaliana OX=3702 GN=ATX4 PE=2 SV=3 | 0 | |
| TrEMBL | A0A5B7APC3 | Putative histone-lysine N-methyltransferase ATX5 OS=Davidia involucrata OX=16924 GN=Din_027948 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 17.161299 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.038199 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 16.112801 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 16.468487 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.0555 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 18.54368 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 17.433369 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 20.79587 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 20.744249 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 22.585709 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.092983 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 22.758699 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 19.474874 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.563354 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.924265 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.1046 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.402568 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 8.493202 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.746574 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.885423 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.02183 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.835355 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.663078 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.702781 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.494372 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.302512 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.209476 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.995528 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.957587 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.112245 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.649177 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.186592 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.747292 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.676834 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.015135 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.350992 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.429357 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.939772 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.847829 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.59444 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.110698 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.882181 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.752743 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 13.938467 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.647423 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.604028 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.472358 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.829441 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 19.906429 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.227648 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13889, jg26921 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23546, gene_3304 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah018632, Ah022859 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g003150, BVRB_3g052080 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg15093, Sbi_jg3958, Sbi_jg49172, Sbi_jg55908 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg26405, Seu_jg6071 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00000578, GOSA_00000580, GOSA_00020060 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl01350, Sgl06427, Sgl06504, Sgl10912, Sgl16266 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000001146, gene:ENSEOMG00000015979 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0002130, CQ.Regalona.r1.2BG0026180 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30005780, pistato.v30164460 |
| Apiaceae | Apium graveolens | 4 | Ag2G02092, Ag3G02040, Ag6G00235, Ag6G00261 |
| Arecaceae | Cocos nucifera | 3 | COCNU_03G013090, COCNU_06G002700, COCNU_14G000250 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702976, gene-LOC103713329, gene-LOC120108262 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2598.V1.1, AsparagusV1_05.2829.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G29884, Ftri18G17751, Ftri5G04961 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G61740.1, AT4G27910.1, AT5G53430.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10005766m.g.v1.0, Thhalv10012524m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp5g01630.v2.2, Sp6g15560.v2.2, Sp7g25880.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g031770.2N, BniB06g052810.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G1266, Ceq09G1634 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1307, Cgl09G1768 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g12460, gene.Cymno02g12610 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0308s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g25870, gene.Thate07g15770 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-11730, nbisL1-mrna-6156, nbisL1-mrna-9536 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG04.706, evm.TU.LG05.977, evm.TU.LG09.503 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00017875, Pov_00041147 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03663, Lb1G04196 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.178, AH02.2566, BH02.173, BH02.2667, CH02.203 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0001680, gene-QOZ80_1AG0026990 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0244900.1, HORVU.MOREX.r3.3HG0276610.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_051349 |
| Poaceae | Oryza coarctata | 6 | Oco01G005160, Oco01G005170, Oco01G016110, Oco02G005210 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g11952.1, LOC_Os01g11960.1, LOC_Os01g46700.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G015300, gene-BS78_03G215700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0404342, Pt_Chr0503283, Pt_Chr0604993 |
| Poaceae | Sporobolus alterniflorus | 9 | Chr02G013960, Chr03G000190, Chr03G012330, Chr05G019840 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G242900, Tel3E01G401900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG019070, gene_TRIDC3AG035470 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G143300.2, TraesCS3A02G237200.2 ... |
| Poaceae | Zea mays | 4 | Zm00001eb119830_P001, Zm00001eb158060_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-24332, nbis-gene-25942, nbis-gene-29050 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g10781, Zma_g7229, Zma_g8343, Zma_g9554 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1973, evm.TU.LG11.1663, evm.TU.LG19.1278 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g23240, gene.Posoc08g13740 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.60378.4, evm.TU.60378.5, evm.TU.Scaffold_1_RagTag.539 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-21614, nbisL1-mrna-7504 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2559, nbisL1-mrna-937 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-5647, nbisL1-mrna-7401 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.206, evm.TU.utg000012l.389 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00011473, Maker00017799 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1703, nbisL1-mrna-8408 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-5437, nbisL1-mrna-746 |
| Salicaceae | Populus euphratica | 4 | populus_peu27564, populus_peu28040, populus_peu29483 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132631391, gene-LOC132632069, gene-LOC132645451 |
| Solanaceae | Solanum chilense | 3 | SOLCI000802600, SOLCI001699900, SOLCI004966200 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107008267, gene-LOC107013606, gene-LOC107015255 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_5165, gene_731, gene_9968 |
| Tamaricaceae | Tamarix chinensis | 4 | TC03G1956, TC06G1518, TC08G1398, TC09G2333 |
| Zosteraceae | Zostera marina | 2 | Zosma01g14670.v3.1, Zosma06g08050.v3.1 |