Basic Information
Locus ID:
Ag3G02006
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 194138090 | 194142455 | - | Ag3G02006 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 48,809.23 Da | 44.63 | 95.85 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03501 | Plectin/S10 domain | 5 | 84 | 1.9E-35 | IPR005326 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 236 | 297 | 2.5E-8 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 298 | 404 | 9.7E-10 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 220 | 405 | 8.21E-31 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 212 | 299 | 1.3E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 300 | 424 | 4.4E-18 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 2 | 94 | 4.8E-38 | IPR036388 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 232 | 429 | 11.439366 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 238 | 261 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G01540.2 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017246489.1 | PREDICTED: probable serine/threonine-protein kinase At1g01540 [Daucus carota subsp. sativus] | 0 |
| Q3EDL4 | Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana OX=3702 GN=At1g01540 PE=1 SV=2 | 0 | |
| TrEMBL | A0A165XFG2 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 54.992085 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 41.245266 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 27.265621 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 29.474224 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 30.023544 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 33.089951 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 23.973446 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 17.952679 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 111.396553 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 112.159874 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 115.708191 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 120.774933 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 110.901657 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 114.870842 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 49.508625 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 76.613564 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 67.247421 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 70.802193 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 64.858086 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 89.528709 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 75.968445 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 111.722023 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 125.553078 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 126.72625 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 114.25074 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 75.400688 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 78.319092 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 63.850239 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 85.477394 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 36.24448 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 56.036392 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 60.270397 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 40.557457 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 78.988403 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 44.547325 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 41.186394 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 29.310287 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 36.749798 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 74.585587 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 37.873867 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 25.901003 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 40.936729 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 30.223583 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 47.909668 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 36.567242 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 55.405594 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 36.865532 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 130.712112 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 109.289291 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 95.971207 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg13947 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_14711, gene_3245 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah004562, Ah030279 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g053340, BVRB_5g099980 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg38456, Sbi_jg4818, Sbi_jg6566, Sbi_jg7267 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12744, Seu_jg15356 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006455 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl01888, Sgl07066, Sgl65209, Sgl69623 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000005631, gene:ENSEOMG00000006835 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5BG0007120, CQ.Regalona.r1.7AG0022800 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30135470, pistato.v30183580 |
| Apiaceae | Apium graveolens | 2 | Ag10G02583, Ag3G02006 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G019180, COCNU_02G010590 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103701249, gene-LOC103703191, gene-LOC103704379 ... |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_02.742.V1.1, AsparagusV1_04.378.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri18G20885, Ftri4G24507, Ftri8G03980 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT4G25740.1, AT5G41520.1, AT5G52650.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10014804m.g.v1.0, Thhalv10026365m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g14820.v2.2, Sp7g23770.v2.2 |
| Brassicaceae | Brassica nigra | 9 | BniB01g024880.2N, BniB02g030350.2N, BniB02g082100.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0286, Ceq09G1486 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G0332, Cgl03G0369, Cgl09G1577 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno07g01280, gene.Cymno08g07800 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0053s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g14060, gene.Thate09g01640 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1625, nbisL1-mrna-8457 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2785, evm.TU.LG10.1448 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00010578, Pov_00041024 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G38044, Lb1G03924, Lb3G21086 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.4604, AH09.1010, BH02.4662, BH09.1082, CH02.4710 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0047510, gene-QOZ80_1BG0097440 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_016920, gene-QYE76_058782 |
| Poaceae | Oryza coarctata | 5 | Oco01G030590, Oco02G031690, Oco04G014160, Oco07G005900 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g73160.1, LOC_Os02g34460.2, LOC_Os04g35090.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G410600, gene-BS78_03G412700 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0302687, Pt_Chr0302727, Pt_Chr0600869, Pt_Chr0605886 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr02G000530, Chr03G023800, Chr05G034250, Chr08G017930 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G534300, Tel3E01G842100, Tel4E01G265900 |
| Poaceae | Triticum dicoccoides | 8 | gene_TRIDC1AG048620, gene_TRIDC1BG053260 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G302600.1, TraesCS2B02G318500.1 ... |
| Poaceae | Zea mays | 7 | Zm00001eb024580_P001, Zm00001eb082850_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-28090, nbis-gene-37861, nbis-gene-7670 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g11988, Zma_g19699, Zma_g21283 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.1438, evm.TU.LG10.494, evm.TU.LG14.1491 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g16800, gene.Posoc05g20370 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1436 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-12731, nbisL1-mrna-22387, nbisL1-mrna-29254 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-10281, nbisL1-mrna-14436, nbisL1-mrna-5512 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-20345, nbisL1-mrna-2193, nbisL1-mrna-22446 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.51, evm.TU.utg000010l.403 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000988, Maker00008667, Maker00014337 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-1111, nbisL1-mrna-2330, nbisL1-mrna-3543 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20550, nbisL1-mrna-6311 |
| Salicaceae | Populus euphratica | 4 | populus_peu09803, populus_peu13463, populus_peu15802 ... |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132604292, gene-LOC132609088, gene-LOC132611468 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI002319400, SOLCI006480400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007590, gene-LOC107008029 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_14765, gene_5230 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G3375, TC06G2328, TC08G1541 |
| Zosteraceae | Zostera marina | 2 | Zosma04g14810.v3.1, Zosma04g16410.v3.1 |