halophFGD

Basic Information

Locus ID: Ag3G01992

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Zinc finger protein VAR3

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	192575845	192584916	+	Ag3G01992

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.52	53,332.41 Da	41.23	70.57	-0.56

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00641	Zn-finger in Ran binding protein and others	351	379	1.0E-5	IPR001876
Pfam	PF00641	Zn-finger in Ran binding protein and others	390	418	5.5E-5	IPR001876
Pfam	PF00641	Zn-finger in Ran binding protein and others	274	297	4.2E-5	IPR001876
Pfam	PF00641	Zn-finger in Ran binding protein and others	425	451	5.0E-4	IPR001876
Pfam	PF00641	Zn-finger in Ran binding protein and others	312	336	8.0E-5	IPR001876
SUPERFAMILY	SSF90209	Ran binding protein zinc finger-like	421	453	1.73E-5	IPR036443
SUPERFAMILY	SSF90209	Ran binding protein zinc finger-like	345	377	3.53E-6	IPR036443
SUPERFAMILY	SSF90209	Ran binding protein zinc finger-like	270	301	7.46E-6	IPR036443
SUPERFAMILY	SSF90209	Ran binding protein zinc finger-like	306	340	4.32E-6	IPR036443
SUPERFAMILY	SSF90209	Ran binding protein zinc finger-like	386	419	5.76E-5	IPR036443
Gene3D	G3DSA:4.10.1060.10	-	384	418	2.4E-9	-
Gene3D	G3DSA:4.10.1060.10	-	266	303	1.2E-11	-
Gene3D	G3DSA:4.10.1060.10	-	304	342	6.9E-12	-
Gene3D	G3DSA:4.10.1060.10	-	343	381	8.3E-13	-
Gene3D	G3DSA:4.10.1060.10	-	419	454	3.5E-11	-
SMART	SM00547	zf_4	425	449	3.3E-4	IPR001876
SMART	SM00547	zf_4	275	299	0.0027	IPR001876
SMART	SM00547	zf_4	392	416	9.8E-6	IPR001876
SMART	SM00547	zf_4	353	377	1.5E-5	IPR001876
SMART	SM00547	zf_4	314	338	0.052	IPR001876
ProSiteProfiles	PS50199	Zinc finger RanBP2 type profile.	390	419	10.263121	IPR001876
ProSiteProfiles	PS50199	Zinc finger RanBP2 type profile.	423	452	9.834018	IPR001876
ProSiteProfiles	PS50199	Zinc finger RanBP2 type profile.	351	380	9.585588	IPR001876
ProSiteProfiles	PS50199	Zinc finger RanBP2 type profile.	312	341	9.224238	IPR001876
ProSiteProfiles	PS50199	Zinc finger RanBP2 type profile.	273	302	9.517836	IPR001876
ProSitePatterns	PS01358	Zinc finger RanBP2-type signature.	394	413	-	IPR001876
ProSitePatterns	PS01358	Zinc finger RanBP2-type signature.	316	335	-	IPR001876
ProSitePatterns	PS01358	Zinc finger RanBP2-type signature.	277	296	-	IPR001876
ProSitePatterns	PS01358	Zinc finger RanBP2-type signature.	427	446	-	IPR001876

KEGG Pathway

KO Term:

K14651 (transcription initiation factor TFIID subunit 15)

Pathway:

ko03022 (Basal transcription factors) map03022 (Basal transcription factors)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G48570.1	zinc finger (Ran-binding) family protein.
RefSeq	XP_017247870.1	PREDICTED: zinc finger protein VAR3, chloroplastic [Daucus carota subsp. sativus]
TrEMBL	A0A162A9P8	Zinc finger protein VAR3, chloroplastic OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014506 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	20.256857	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	18.159796	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	15.915184	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	17.0947	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	17.331839	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	21.333675	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	14.44355	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	13.305806	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	27.354971	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	23.859024	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	28.505556	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	27.497877	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	25.998262	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	23.067205	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	4.157321	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	3.704166	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	5.566678	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	6.994124	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	7.328998	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	8.879874	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	7.636369	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	8.947211	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	9.101937	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	10.235794	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	9.810806	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	9.688079	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	8.919355	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	10.148458	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	8.890018	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	6.28048		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	12.374037		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	11.834886		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	18.318472		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	17.816292		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	19.159525		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	10.963937		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	9.073826		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	7.708548		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	14.909912	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	10.895358	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.565978	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	7.375432	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	4.435221	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	16.792168	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	10.78608	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	12.377562	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	7.818066	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	20.800983	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	20.782246	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	19.601877	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg18508, jg26572, jg7362
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10467, gene_19906
Amaranthaceae	Atriplex hortensis	2	Ah002107, Ah005787
Amaranthaceae	Beta vulgaris	2	BVRB_4g081330, BVRB_5g110990
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17078, Sbi_jg32026, Sbi_jg57319, Sbi_jg61629
Amaranthaceae	Salicornia europaea	1	Seu_jg25047
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00008397, GOSA_00019259
Amaranthaceae	Suaeda glauca	4	Sgl24535, Sgl29700, Sgl53851, Sgl59114
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000005102, gene:ENSEOMG00000023265 ... gene:ENSEOMG00000026795, gene:ENSEOMG00000028965, gene:ENSEOMG00000039962
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.4AG0008530, CQ.Regalona.r1.5AG0015630 ... CQ.Regalona.r1.5BG0016800
Anacardiaceae	Pistacia vera	4	pistato.v30084090, pistato.v30127270, pistato.v30149750 ... pistato.v30218140
Apiaceae	Apium graveolens	3	Ag3G01992, Ag7G01610, Ag8G01876
Arecaceae	Cocos nucifera	3	COCNU_03G009990, COCNU_03G010040, COCNU_12G001970
Arecaceae	Phoenix dactylifera	3	gene-LOC103697650, gene-LOC103697653, gene-LOC103724379
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.969.V1.1, AsparagusV1_03.1559.V1.1 ... AsparagusV1_08.3105.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G27548, Ftri15G22692, Ftri8G01563
Brassicaceae	Arabidopsis thaliana	3	AT1G48570.1, AT1G55040.1, AT1G70650.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10011523m.g.v1.0, Thhalv10019608m.g.v1.0 ... Thhalv10023272m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g35510.v2.2, SpUn0004_0260.v2.2
Brassicaceae	Brassica nigra	3	BniB03g048490.2N, BniB04g018590.2N, BniB04g062250.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq03G2825, Ceq06G1198, Ceq09G0846
Casuarinaceae	Casuarina glauca	3	Cgl03G2979, Cgl06G1252, Cgl09G0915
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno05g04750, gene.Cymno11g03380, gene.Cymno13g02570
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g27060, gene.Thate05g18990, gene.Thate05g23570
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-7777, nbisL1-mrna-7778
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.1253, evm.TU.LG03.2444, evm.TU.LG10.66
Plantaginaceae	Plantago ovata	3	Pov_00007269, Pov_00017210, Pov_00018589
Plumbaginaceae	Limonium bicolor	3	Lb3G16589, Lb6G29930, Lb8G36144
Poaceae	Echinochloa crus-galli	10	AH01.845, AH01.870, AH01.871, AH03.887, BH01.1013, BH01.988 ... BH03.1014, CH01.1034, CH01.1062, CH03.1175
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0219350, gene-QOZ80_3BG0264620 ... gene-QOZ80_7AG0563990, gene-QOZ80_7BG0597280
Poaceae	Lolium multiflorum	3	gene-QYE76_026028, gene-QYE76_062435, gene-QYE76_062848
Poaceae	Oryza coarctata	7	Oco05G021460, Oco05G021700, Oco06G022260, Oco06G022470 ... Oco13G006110, Oco14G006580, Oco18G000710
Poaceae	Oryza sativa	3	LOC_Os03g50120.1, LOC_Os03g50430.1, LOC_Os07g22024.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G106500, gene-BS78_01G108600 ... gene-BS78_02G081200
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0105035, Pt_Chr0206277, Pt_Chr0206292, Pt_Chr0502644
Poaceae	Sporobolus alterniflorus	9	Chr01G007230, Chr04G026810, Chr04G027010, Chr07G025820 ... Chr12G030250, Chr19G015250, Chr24G006040, Chr27G000270, Chr28G005510
Poaceae	Thinopyrum elongatum	4	Tel4E01G080000, Tel4E01G083000, Tel6E01G639600 ... Tel7E01G647100
Poaceae	Triticum dicoccoides	5	gene_TRIDC4AG041760, gene_TRIDC4AG042040 ... gene_TRIDC4BG006930, gene_TRIDC4BG007290, gene_TRIDC6AG053860
Poaceae	Triticum aestivum	10	TraesCS4A02G267600.1, TraesCS4A02G269900.1 ... TraesCS4B02G044200.1, TraesCS4B02G046800.1, TraesCS4D02G041700.1, TraesCS4D02G046600.1, TraesCS6A02G359500.1, TraesCS6B02G392400.1, TraesCS6D02G103100.1, TraesCS6D02G342400.1
Poaceae	Zea mays	3	Zm00001eb094690_P002, Zm00001eb216320_P001 ... Zm00001eb216480_P002
Poaceae	Zoysia japonica	4	nbis-gene-14801, nbis-gene-14802, nbis-gene-15920 ... nbis-gene-38866
Poaceae	Zoysia macrostachya	3	Zma_g2955, Zma_g6296, Zma_g659
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.1024, evm.TU.LG08.659, evm.TU.LG22.1255 ... evm.TU.LG23.41
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g10140, gene.Posoc03g13770, gene.Posoc04g06360 ... gene.Posoc10g05280
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.60387.1, evm.TU.60388.1 ... evm.TU.Scaffold_11_RagTag.740, evm.TU.Scaffold_17_RagTag.771, evm.TU.Scaffold_2_RagTag.2048
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-14411, nbisL1-mrna-23477, nbisL1-mrna-2757 ... nbisL1-mrna-2820
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1125, nbisL1-mrna-11782, nbisL1-mrna-12587
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-12351, nbisL1-mrna-13689, nbisL1-mrna-20045
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000009l.62, evm.TU.utg000013l.424 ... evm.TU.utg000061l.25
Rhizophoraceae	Kandelia obovata	3	Maker00004422, Maker00005159, Maker00009092
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10819, nbisL1-mrna-12978, nbisL1-mrna-927
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-14268, nbisL1-mrna-16161
Salicaceae	Populus euphratica	3	populus_peu13412, populus_peu28255, populus_peu29707
Solanaceae	Lycium barbarum	2	gene-LOC132609147, gene-LOC132633197
Solanaceae	Solanum chilense	3	SOLCI000273200, SOLCI000665200, SOLCI006610100
Solanaceae	Solanum pennellii	2	gene-LOC107014296, gene-LOC107026902
Tamaricaceae	Reaumuria soongarica	3	gene_10199, gene_12408, gene_8930
Tamaricaceae	Tamarix chinensis	3	TC04G0097, TC10G2609, TC12G2018
Zosteraceae	Zostera marina	3	Zosma03g20430.v3.1, Zosma03g23750.v3.1, Zosma06g07010.v3.1