Basic Information
Locus ID:
Ag3G01952
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
DUF4210
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 179909505 | 179914483 | + | Ag3G01952 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 74,925.37 Da | 56.10 | 70.40 | -0.49 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26890.6 | 0 | |
| RefSeq | XP_017244096.1 | PREDICTED: uncharacterized protein LOC108215963 isoform X2 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A165XGV7 | DUF4210 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014485 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.749097 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.04631 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.197308 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.821381 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.679713 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.861933 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.256578 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.454414 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 6.484107 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 6.554563 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 8.489588 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 9.022722 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.980384 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.899633 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.422552 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.75164 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.802416 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.263659 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.047911 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.017609 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.275207 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.059377 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.57343 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.766357 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.669691 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.43121 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.870616 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.176234 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.590505 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.678305 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.013902 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.839203 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.55262 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.143291 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.518327 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.076137 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.739151 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.857708 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.698228 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.62389 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.054236 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.790857 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.538825 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.677133 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.255258 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.759769 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.278296 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.4144 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.236468 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.064292 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13402, jg27070 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_13978, gene_25025, gene_4101 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026887 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_5g112990, BVRB_6g130860, BVRB_6g130880 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg13671, Sbi_jg30806, Sbi_jg52231, Sbi_jg58461 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg28331, Seu_jg9614 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004905, GOSA_00017640 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl33461, Sgl38828, Sgl53731, Sgl58996 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000003192, gene:ENSEOMG00000003355 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0017650, CQ.Regalona.r1.5BG0018830 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30012350, pistato.v30025210 |
| Apiaceae | Apium graveolens | 3 | Ag3G01952, Ag5G00777, Ag6G01497 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G009330, COCNU_02G009340, COCNU_11G003500 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707826, gene-LOC103715320 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1526.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G20134, Ftri18G20286 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G26890.1, AT5G41110.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003798m.g.v1.0, Thhalv10027694m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g16010.v2.2, Sp7g00790.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g067090.2N, BniB04g007660.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0069 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G2137, Cgl08G0075 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g03350 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g10070 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10388 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.587, evm.TU.LG05.92 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00024312, Pov_00033528 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G15219, Lb5G27077 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.2538, AH08.2202, BH03.2688, BH08.2333, CH03.2892 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0494880.1, HORVU.MOREX.r3.7HG0684880.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_006502, gene-QYE76_006506, gene-QYE76_030333 |
| Poaceae | Oryza coarctata | 4 | Oco15G009770, Oco16G012670, Oco17G009020, Oco18G009130 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g42420.1, LOC_Os09g33520.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G236600, gene-BS78_07G205900 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0403566, Pt_Chr0701358, Pt_Chr0701376 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G015330, Chr11G006990, Chr20G000930, Chr29G001260 |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G466400, Tel5E01G466500, Tel7E01G461700 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC1AG003780, gene_TRIDC5AG043670 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G291800.1, TraesCS5B02G290900.4 ... |
| Poaceae | Zea mays | 3 | Zm00001eb036950_P001, Zm00001eb280240_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17537, nbis-gene-19387 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g24445, Zma_g32861 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.2758, evm.TU.LG02.179, evm.TU.LG03.2307 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g13710 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_11_RagTag.1170, evm.TU.Scaffold_4_RagTag.319 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-12366, nbisL1-mrna-12479, nbisL1-mrna-28505 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18683, nbisL1-mrna-6921 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12745, nbisL1-mrna-1987 |
| Rhizophoraceae | Kandelia candel | 4 | add.evm.TU.utg000008l.205, evm.TU.utg000008l.202 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00001009, Maker00001103, Maker00008683 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-14363, nbisL1-mrna-14705, nbisL1-mrna-632 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-1324, nbisL1-mrna-19329, nbisL1-mrna-8818 |
| Salicaceae | Populus euphratica | 3 | populus_peu01290, populus_peu28924, populus_peu30318 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632318 |
| Solanaceae | Solanum chilense | 1 | SOLCI007161100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014550 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.13955_chr05_+, gene_259 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3417, TC03G1118 |
| Zosteraceae | Zostera marina | 1 | Zosma02g01500.v3.1 |