Basic Information
Locus ID:
Ag3G01945
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 177286080 | 177290573 | - | Ag3G01945 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 42,338.05 Da | 33.53 | 94.87 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 83 | 348 | 4.3E-43 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 60 | 347 | 4.59E-62 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 40 | 151 | 1.5E-31 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 152 | 365 | 5.4E-45 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 79 | 352 | 32.824108 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 85 | 108 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 198 | 210 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26700.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017243812.1 | PREDICTED: putative serine/threonine-protein kinase isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q06548 | Probable serine/threonine-protein kinase PBL9 OS=Arabidopsis thaliana OX=3702 GN=PBL9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165XHM7 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014463 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.377108 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.068865 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.352314 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.137964 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.344612 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.63158 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.765882 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.198272 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 5.836473 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 5.787261 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 6.299327 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.79303 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 4.881121 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 4.379378 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 18.930202 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 19.070532 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 18.889477 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.970576 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.282775 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.031185 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.420457 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 23.070944 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 25.047026 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 18.268501 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 17.598936 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.198075 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.229018 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.47862 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 16.743591 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.473687 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.339252 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.809391 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.75455 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.417575 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.565807 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.243727 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.360889 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.012534 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.79811 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.49986 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.995041 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.623754 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.517571 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 18.246443 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 17.752012 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.748288 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 24.979807 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.521434 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.59455 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 7.420114 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17639, jg28007 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13863, gene_24966 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012588 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g151710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42174, Sbi_jg44733 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27361 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00024446 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl31739, Sgl37025 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003454, gene:ENSEOMG00000003456 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0009720 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30021540, pistato.v30058670, pistato.v30234990 |
| Apiaceae | Apium graveolens | 2 | Ag2G01219, Ag3G01945 |
| Arecaceae | Cocos nucifera | 4 | COCNU_16G002980, scaffold000446G000010 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103698609, gene-LOC103711750, gene-LOC103716041 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.1576.V1.1, AsparagusV1_07.1527.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G10679 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G21450.1, AT3G26700.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004401m.g.v1.0, Thhalv10021237m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g15820.v2.2, Sp3g19460.v2.2, Sp3g19470.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g066960.2N, BniB04g007820.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq08G0018, Ceq08G0021, Ceq09G1190 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G0016, Cgl09G1279 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g01960 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g26360, gene.Thate05g08330 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-562 |
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.LG05.39, evm.TU.LG07.113, evm.TU.LG09.915 ... |
| Plantaginaceae | Plantago ovata | 2 | Pov_00025057, Pov_00026175 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G29992 |
| Poaceae | Echinochloa crus-galli | 7 | AH02.4398, AH02.4444, BH02.4432, BH02.4484, BH05.2806 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0045360, gene-QOZ80_1AG0045860 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0059910.1, HORVU.MOREX.r3.3HG0312470.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_018301, gene-QYE76_057594, gene-QYE76_057751 |
| Poaceae | Oryza coarctata | 4 | Oco01G029110, Oco01G029440, Oco02G030630, Oco09G007940 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g70410.1, LOC_Os01g70970.1, LOC_Os05g30820.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G391100, gene-BS78_03G396400 ... |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0403181, Pt_Chr0505273, Pt_Chr0505317, Pt_Chr0600616 ... |
| Poaceae | Sporobolus alterniflorus | 11 | Chr01G021850, Chr02G001500, Chr02G001930, Chr03G023310 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G390600, Tel3E01G700600, Tel3E01G731100 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG035710, gene_TRIDC1BG040630 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G236900.2, TraesCS1B02G246900.2 ... |
| Poaceae | Zea mays | 3 | Zm00001eb142430_P001, Zm00001eb285380_P002 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-28218, nbis-gene-48455 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g11891, Zma_g26726, Zma_g9319 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2221, evm.TU.LG17.1276 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g04560 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.250, evm.TU.Scaffold_6_RagTag.629 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-16062, nbisL1-mrna-26552, nbisL1-mrna-27473 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15364, nbisL1-mrna-15915 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14318, nbisL1-mrna-522 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.211, evm.TU.utg000011l.371 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00008215, Maker00010170 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-13704, nbisL1-mrna-22273, nbisL1-mrna-388 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18965, nbisL1-mrna-3607 |
| Salicaceae | Populus euphratica | 2 | populus_peu27102, populus_peu30960 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132623717, gene-LOC132626841 |
| Solanaceae | Solanum chilense | 2 | SOLCI004016200, SOLCI007246100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008443, gene-LOC107011091 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_353 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1052 |
| Zosteraceae | Zostera marina | 1 | Zosma01g25760.v3.1 |