Basic Information
Locus ID:
Ag3G01917
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 169688793 | 169695358 | + | Ag3G01917 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.29 | 56,401.21 Da | 33.32 | 113.39 | 0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17315 | MFS_GLUT_like | 99 | 517 | 1.11989E-141 | - |
| Pfam | PF00083 | Sugar (and other) transporter | 99 | 529 | 8.2E-106 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 82 | 529 | 3.14E-67 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 85 | 531 | 2.0E-130 | IPR036259 |
| TIGRFAM | TIGR00879 | SP: MFS transporter, sugar porter (SP) family | 77 | 526 | 1.5E-102 | IPR003663 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 96 | 519 | 50.808548 | IPR020846 |
| ProSitePatterns | PS00217 | Sugar transport proteins signature 2. | 194 | 219 | - | IPR005829 |
| PRINTS | PR00171 | Sugar transporter signature | 189 | 208 | 5.7E-24 | IPR003663 |
| PRINTS | PR00171 | Sugar transporter signature | 454 | 466 | 5.7E-24 | IPR003663 |
| PRINTS | PR00171 | Sugar transporter signature | 344 | 354 | 5.7E-24 | IPR003663 |
| PRINTS | PR00171 | Sugar transporter signature | 104 | 114 | 5.7E-24 | IPR003663 |
| PRINTS | PR00171 | Sugar transporter signature | 431 | 452 | 5.7E-24 | IPR003663 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16150.1 | plastidic GLC translocator. Encodes a putative plastidic glucose transporter. | 0 |
| RefSeq | XP_017236127.1 | PREDICTED: plastidic glucose transporter 4-like [Daucus carota subsp. sativus] | 0 |
| Q56ZZ7 | Plastidic glucose transporter 4 OS=Arabidopsis thaliana OX=3702 GN=At5g16150 PE=1 SV=2 | 0 | |
| TrEMBL | A0A162AYF3 | MFS domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008460 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 33.760788 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 30.615902 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 26.760077 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 27.014671 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 32.955811 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 22.476028 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 19.400457 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 12.318014 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 82.892517 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 83.906754 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 91.465408 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 81.84272 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 76.797997 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 80.832993 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 69.015457 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 104.501793 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 68.053436 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 138.224319 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 167.230438 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 149.993713 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 111.906326 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 61.251644 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 57.379375 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 72.355476 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 74.841957 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 153.747437 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 146.084839 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 128.708221 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 175.526245 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 23.475595 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 69.97364 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 60.493687 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 21.258078 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 30.824154 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 20.003107 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 24.438532 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 9.771539 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 15.93262 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 171.471512 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 144.370285 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 111.287277 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 31.874447 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 29.507965 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 52.939514 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 43.066547 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 36.704155 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 38.568954 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 50.284599 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 55.226154 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 52.030361 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39813 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23865 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035501 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g027020 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21617, Sbi_jg22201 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16127 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008735 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl62677, Sgl67238, Sgl67299 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018547, gene:ENSEOMG00000022066 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0019120, CQ.Regalona.r1.2BG0020790 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30191350 |
| Apiaceae | Apium graveolens | 2 | Ag3G01917, Ag4G00531 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G006170, COCNU_03G008820 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103723271, gene-LOC103723589 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.732.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G26976, Ftri6G32214 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G16150.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013176m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g27990.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g046580.2N, BniB08g007710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0722 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0718 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g09210, gene.Cymno11g01260 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0444s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g01250 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.470 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013925 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01882 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.785, BH02.779, CH02.880 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0057290 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0225770.2 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_048893, gene-QYE76_049009, gene-QYE76_049011 |
| Poaceae | Oryza coarctata | 2 | Oco01G001320, Oco02G001340 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g04190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G075900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205552, Pt_Chr0205637 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G024100, Chr03G003700, Chr05G002060, Chr08G001290 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G083100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG003990, gene_TRIDC3BG006320 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G036600.1, TraesCS3B02G047300.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb125210_P003, Zm00001eb335350_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-12951, nbis-gene-7042 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g7554, Zma_g9916 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.777, evm.TU.LG06.866, evm.TU.LG11.205 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g02120 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.506 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15426 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15807 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-404 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.279 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008398 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13799 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3739 |
| Salicaceae | Populus euphratica | 3 | populus_peu09558, populus_peu09564, populus_peu24975 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621267 |
| Solanaceae | Solanum chilense | 1 | SOLCI005341000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011167 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10690 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0691 |
| Zosteraceae | Zostera marina | 1 | Zosma01g11670.v3.1 |