Basic Information
Locus ID:
Ag3G01911
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 168965550 | 168974900 | + | Ag3G01911 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 147,335.11 Da | 39.36 | 74.81 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01887 | IF2_eIF5B | 749 | 959 | 3.2657E-83 | - |
| CDD | cd03703 | aeIF5B_II | 970 | 1080 | 3.31817E-52 | - |
| CDD | cd16266 | IF2_aeIF5B_IV | 1209 | 1302 | 1.75113E-29 | - |
| Pfam | PF03144 | Elongation factor Tu domain 2 | 985 | 1060 | 1.0E-10 | IPR004161 |
| Pfam | PF00009 | Elongation factor Tu GTP binding domain | 750 | 956 | 2.7E-34 | IPR000795 |
| Pfam | PF11987 | Translation-initiation factor 2 | 1084 | 1187 | 6.8E-23 | IPR023115 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 745 | 1037 | 1.33E-65 | IPR027417 |
| SUPERFAMILY | SSF50447 | Translation proteins | 1205 | 1337 | 7.86E-30 | IPR009000 |
| SUPERFAMILY | SSF52156 | Initiation factor IF2/eIF5b, domain 3 | 1072 | 1200 | 5.62E-35 | IPR036925 |
| Gene3D | G3DSA:3.40.50.10050 | - | 1090 | 1193 | 1.2E-38 | IPR036925 |
| Gene3D | G3DSA:2.40.30.10 | Translation factors | 1201 | 1338 | 4.0E-59 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 740 | 968 | 1.4E-71 | IPR027417 |
| Gene3D | G3DSA:2.40.30.10 | Translation factors | 969 | 1089 | 8.9E-52 | - |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 751 | 877 | 2.3E-15 | IPR005225 |
| ProSiteProfiles | PS51722 | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 746 | 962 | 45.166946 | IPR000795 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 116 | 128 | - | IPR018247 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 866 | 875 | 5.9E-7 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 830 | 841 | 5.9E-7 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 814 | 824 | 5.9E-7 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 750 | 763 | 5.9E-7 | IPR000795 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 546 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 652 | 682 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 707 | 722 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 596 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 651 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 741 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 741 | - | - |
| Coils | Coil | Coil | 409 | 440 | - | - |
| Coils | Coil | Coil | 466 | 531 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76810.1 | eukaryotic translation initiation factor 2 (eIF-2) family protein. | 0 |
| RefSeq | XP_017246867.1 | PREDICTED: eukaryotic translation initiation factor 5B [Daucus carota subsp. sativus] | 0 |
| G0S8G9 | Eukaryotic translation initiation factor 5B OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=CTHT_0029840 PE=1 SV=2 | 0 | |
| TrEMBL | A0A165XIS1 | Eukaryotic translation initiation factor 5B OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014429 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 45.856876 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 33.770229 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 34.431057 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 39.044262 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 39.563717 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 34.914513 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 39.521816 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 38.63538 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 55.208485 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 52.696957 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 55.02607 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 58.044678 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 61.544403 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 45.885494 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 22.559183 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 26.187386 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 20.935682 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 37.474957 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 22.641188 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 44.785133 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 47.90266 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 31.468138 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 30.208181 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 27.058367 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 29.517029 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 43.727562 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 30.961962 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 35.013607 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 41.697422 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 9.381923 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 14.951075 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 12.244672 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 15.6549 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 16.131927 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 14.47582 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.621778 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.11404 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.863388 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 33.509644 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 22.065691 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 16.556177 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 59.646172 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 42.297619 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 56.059174 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 46.161343 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 66.94368 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 50.842022 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 26.590218 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 26.816721 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 26.769821 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6070 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_15301, gene_245 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah003421, Ah018262, Ah018421 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_3g050350, BVRB_7g173810, BVRB_9g202210 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg14893, Sbi_jg28723, Sbi_jg2920, Sbi_jg31007 ... |
| Amaranthaceae | Salicornia europaea | 7 | Seu_jg22981, Seu_jg22982, Seu_jg26226, Seu_jg6833 ... |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00004375, GOSA_00004376, GOSA_00017916 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01135, Sgl06220 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000003077, gene:ENSEOMG00000021883 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0006900, CQ.Regalona.r1.3AG0006930 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30037970 |
| Apiaceae | Apium graveolens | 6 | Ag3G00748, Ag3G00749, Ag3G01911, Ag4G02445, Ag4G02446 ... |
| Arecaceae | Cocos nucifera | 2 | COCNU_14G000450, scaffold033353G000040 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720357, gene-LOC103721040 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1583.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G06402, Ftri12G27292, Ftri9G10744 |
| Brassicaceae | Arabidopsis thaliana | 5 | AT1G21160.1, AT1G76720.1, AT1G76810.1, AT1G76820.1 ... |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10006634m.g.v1.0, Thhalv10018018m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g31970.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g016020.2N, BniB02g016030.2N, BniB03g009000.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1632 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1673 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g04590 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0041s00031.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g24390 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.718 |
| Plantaginaceae | Plantago ovata | 8 | Pov_00011481, Pov_00011596, Pov_00011597, Pov_00011598 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10385, Lb3G16650 |
| Poaceae | Echinochloa crus-galli | 6 | AH05.3560, BH05.1205, BH05.3558, CH01.2697, CH05.1503 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0360980, gene-QOZ80_5AG0391570 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0094710.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_015006, gene-QYE76_042706 |
| Poaceae | Oryza coarctata | 3 | Oco02G013470, Oco09G018380, Oco10G018310 |
| Poaceae | Oryza sativa | 4 | LOC_Os01g40150.1, LOC_Os01g40170.1, LOC_Os05g51500.1 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_08G078500, gene-BS78_08G078600 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505892, Pt_Chr0703558 |
| Poaceae | Sporobolus alterniflorus | 11 | Chr01G016380, Chr04G015670, Chr04G024780, Chr06G016320 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G740900, Tel1E01G741100, Tel1E01G742100 ... |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG064300, gene_TRIDC1BG073510 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G438600.2, TraesCS1B02G472500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb345280_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13527, nbis-gene-48615 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25096, Zma_g27484 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.629, evm.TU.LG03.129, evm.TU.LG03.17 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g14760 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1614 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19623, nbisL1-mrna-8731 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-402, nbisL1-mrna-8952 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-15078, nbisL1-mrna-15079, nbisL1-mrna-8068 ... |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000018l.50, evm.TU.utg000023l.36 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003101 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19721, nbisL1-mrna-9392 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23779 |
| Salicaceae | Populus euphratica | 5 | populus_peu00417, populus_peu18706, populus_peu18723 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636476 |
| Solanaceae | Solanum chilense | 2 | SOLCI001496400, SOLCI003795700 |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107014299, gene-LOC107014401, gene-LOC107017076 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.5392_chr02_+, gene_17626 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1943 |
| Zosteraceae | Zostera marina | 4 | Zosma01g35560.v3.1, Zosma04g20870.v3.1, Zosma277g00050.v3.1 ... |