Basic Information
Locus ID:
Ag3G01856
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 156397442 | 156401927 | - | Ag3G01856 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 108,190.97 Da | 32.62 | 100.29 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 38 | 74 | 1.5E-9 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 686 | 954 | 8.2E-48 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 463 | 484 | 1.1 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 199 | 258 | 3.0E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 511 | 569 | 7.1E-10 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 355 | 572 | 1.25E-39 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 63 | 401 | 1.67E-57 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 678 | 956 | 3.55E-71 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 763 | 967 | 4.6E-60 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 183 | 1.1E-39 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 318 | 604 | 1.2E-71 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 184 | 317 | 1.1E-37 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 682 | 762 | 1.2E-14 | - |
| SMART | SM00369 | LRR_typ_2 | 197 | 221 | 30.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 684 | 963 | 8.2E-36 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 148 | 172 | 240.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 533 | 556 | 29.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 461 | 485 | 16.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 684 | 963 | 38.364635 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 535 | 558 | 7.1113 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 690 | 713 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 806 | 818 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72180.1 | Leucine-rich receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_017246793.1 | PREDICTED: receptor-like protein kinase HAIKU2 [Daucus carota subsp. sativus] | 0 |
| Q9C7T7 | Receptor protein-tyrosine kinase CEPR2 OS=Arabidopsis thaliana OX=3702 GN=CEPR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165XK41 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014393 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 21.30537 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 25.797249 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 24.994186 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 26.299887 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 26.937229 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 27.76144 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 24.945559 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 20.595015 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 69.381294 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 65.071777 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 79.043396 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 63.011673 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 64.323059 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 48.143158 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 25.424294 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 26.564203 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 35.100018 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 27.842617 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 32.361919 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 21.533583 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 22.992409 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 27.695971 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 25.948433 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 25.786596 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 26.436148 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 43.262165 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 31.864676 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 29.022047 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 36.674557 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.589063 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.473743 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.204756 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 15.59949 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 23.410686 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.14055 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.141993 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.467453 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.99766 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.623536 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.021863 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.886602 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.686699 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.80686 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 35.150322 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 31.407639 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.082826 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 20.1213 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 58.922325 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 67.625465 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 65.652122 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12208, jg23255 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23474 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022741 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g001710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg3768, Sbi_jg49018 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6218 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000703 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10773, Sgl16126 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012663, gene:ENSEOMG00000034737 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0001120, CQ.Regalona.r1.2BG0027240 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30167900, pistato.v30287680 |
| Apiaceae | Apium graveolens | 2 | Ag10G01341, Ag3G01856 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G021180, COCNU_02G011540, COCNU_15G003830 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103704812, gene-LOC103711101, gene-LOC103716635 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1024.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G06379 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G72180.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018075m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g27270.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g050350.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g06640 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g08740 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1123 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037651 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12167 |
| Poaceae | Echinochloa crus-galli | 7 | AH02.4065, AH04.886, BH02.4075, BH04.842, CH01.2558 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0041900, gene-QOZ80_1BG0091800 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0344810.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_064246, gene-QYE76_064318 |
| Poaceae | Oryza coarctata | 4 | Oco01G026400, Oco02G027400, Oco21G003500, Oco22G004240 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g65650.1, LOC_Os11g12530.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G355300, gene-BS78_05G121600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0107626, Pt_Chr0502018 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G003170, Chr03G021310, Chr05G030050, Chr07G018920 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G143300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG035790, gene_TRIDC4BG014300 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G224700.1, TraesCS4B02G091500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb145890_P001, Zm00001eb167820_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-11201 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18624, Zma_g9122 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.2065, evm.TU.LG04.2067, evm.TU.LG06.249 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g17640 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1344, evm.TU.Scaffold_8_RagTag.499 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-18415, nbisL1-mrna-20155, nbisL1-mrna-9762 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13495, nbisL1-mrna-2228 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13305, nbisL1-mrna-18082 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.282, evm.TU.utg000018l.677 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011604 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-20333, nbisL1-mrna-20554 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18544, nbisL1-mrna-18668 |
| Salicaceae | Populus euphratica | 1 | populus_peu18974 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132626968, gene-LOC132644132 |
| Solanaceae | Solanum chilense | 2 | SOLCI000511700, SOLCI001279800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004701, gene-LOC107023111 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.10186_chr06_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2416 |
| Zosteraceae | Zostera marina | 1 | Zosma05g10370.v3.1 |