Basic Information
Locus ID:
Ag3G01854
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
OGG1
Description:
N-glycosylase DNA
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 155860950 | 155866268 | + | Ag3G01854 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 43,043.49 Da | 43.08 | 94.26 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00056 | ENDO3c | 178 | 355 | 5.23228E-26 | IPR003265 |
| Pfam | PF00730 | HhH-GPD superfamily base excision DNA repair protein | 181 | 314 | 1.7E-10 | IPR003265 |
| Pfam | PF07934 | 8-oxoguanine DNA glycosylase, N-terminal domain | 69 | 180 | 5.5E-19 | IPR012904 |
| SUPERFAMILY | SSF48150 | DNA-glycosylase | 175 | 356 | 3.45E-38 | IPR011257 |
| SUPERFAMILY | SSF55945 | TATA-box binding protein-like | 57 | 174 | 8.16E-24 | - |
| Gene3D | G3DSA:1.10.1670.10 | - | 147 | 358 | 7.3E-64 | IPR023170 |
| Gene3D | G3DSA:3.30.310.40 | - | 52 | 136 | 1.5E-16 | - |
| Gene3D | G3DSA:1.10.340.30 | Hypothetical protein; domain 2 | 175 | 299 | 7.3E-64 | - |
| SMART | SM00478 | endo3end | 185 | 358 | 3.5E-13 | IPR003265 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 47 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21710.1 | 8-oxoguanine-DNA glycosylase 1. Encodes 8-oxoguanine-DNA glycosylase. DNA repair enzyme. | 0 |
| RefSeq | XP_017243781.1 | PREDICTED: N-glycosylase/DNA lyase OGG1 [Daucus carota subsp. sativus] | 0 |
| Q9FNY7 | N-glycosylase/DNA lyase OGG1 OS=Arabidopsis thaliana OX=3702 GN=OGG1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6L5B8V8 | DNA-(apurinic or apyrimidinic site) lyase OS=Apium graveolens OX=4045 GN=AG4045_002717 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.33312 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.988525 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.42718 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.135932 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.509036 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.182125 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.913722 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.55362 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.705102 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.732261 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 11.819227 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.128412 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 10.063568 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.184239 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.972283 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.801996 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.262667 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.954783 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.997067 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.987727 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.73517 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.147419 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.842512 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.955903 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.511436 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.996299 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.623429 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.304487 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.250965 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.949101 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.478605 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.809927 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.047 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.545505 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.276306 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.98766 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.445284 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.330963 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.656296 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.328359 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.671596 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.190091 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.774604 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.136605 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.046961 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.871235 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.184941 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.562312 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.282457 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.689859 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23151 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22994 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018149 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g000040 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg40187, Sbi_jg50162, Sbi_jg50163 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1769 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011359 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl46354, Sgl51068 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012587, gene:ENSEOMG00000032017 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0009420, CQ.Regalona.r1.3BG0009660 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30039290 |
| Apiaceae | Apium graveolens | 2 | Ag3G01854, AgUnG01141 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G002910 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701337 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.694.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G28857 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G21710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008051m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g19270.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g036510.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2098 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2240 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g07240 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1010s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g13240 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1687 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.858 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00021624, Pov_00021625 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb4G22504, Lb4G22507, Lb4G22515, Lb4G22524 |
| Poaceae | Echinochloa crus-galli | 2 | BH07.2141, CH07.2052 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0133810, gene-QOZ80_2AG0133830 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0230920.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G012340, Oco04G013970 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g34750.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G160400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201778 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G009970, Chr09G014450, Chr13G010450, Chr13G010460 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G137000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG008970, gene_TRIDC3BG012590 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G075400.1, TraesCS3B02G089300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb243580_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18819 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16466 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.864, evm.TU.LG23.147 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g19000, gene.Posoc05g19010 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-9617, nbisL1-mrna-9622 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2482 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18176 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.166 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2905 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20420 |
| Salicaceae | Populus euphratica | 1 | populus_peu14764 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627140 |
| Solanaceae | Solanum chilense | 1 | SOLCI003357900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004889 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15735 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2014 |
| Zosteraceae | Zostera marina | 2 | Zosma03g36970.v3.1, Zosma04g16300.v3.1 |