halophFGD

Basic Information

Locus ID: Ag3G01834

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Peroxisome biogenesis protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	154270381	154286245	-	Ag3G01834

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.35	124,262.47 Da	53.32	95.44	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00009	AAA	581	733	5.42633E-11	-
CDD	cd00009	AAA	867	1004	7.60014E-23	-
Pfam	PF17862	AAA+ lid domain	1027	1061	1.2E-10	IPR041569
Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	587	733	4.5E-17	IPR003959
Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	875	1002	1.3E-38	IPR003959
Pfam	PF09262	Peroxisome biogenesis factor 1, N-terminal	97	170	9.4E-24	IPR015342
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	836	1097	1.44E-59	IPR027417
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	573	819	6.09E-31	IPR027417
SUPERFAMILY	SSF50692	ADC-like	9	88	7.7E-8	IPR009010
SUPERFAMILY	SSF54585	Cdc48 domain 2-like	92	170	5.23E-21	IPR029067
Gene3D	G3DSA:1.10.8.60	-	736	831	2.3E-5	-
Gene3D	G3DSA:3.10.330.10	-	92	171	2.0E-24	-
Gene3D	G3DSA:3.40.50.300	-	836	1097	5.1E-85	IPR027417
Gene3D	G3DSA:3.40.50.300	-	532	735	8.6E-25	IPR027417
Gene3D	G3DSA:1.10.8.60	-	1006	1085	5.1E-85	-
SMART	SM00382	AAA_5	871	1007	1.2E-14	IPR003593
SMART	SM00382	AAA_5	583	736	2.1E-11	IPR003593
ProSitePatterns	PS00674	AAA-protein family signature.	975	993	-	IPR003960
MobiDBLite	mobidb-lite	consensus disorder prediction	258	272	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	250	272	-	-

Gene Ontology

Biological Process:

GO:0007031 (peroxisome organization)

Molecular Function:

GO:0005524 (ATP binding) GO:0016887 (ATP hydrolysis activity)

Cellular Component:

GO:0005777 (peroxisome)

KEGG Pathway

KO Term:

K13338 (peroxin-1)

Pathway:

ko04146 (Peroxisome) map04146 (Peroxisome)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G08470.1	peroxisome 1. an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals.
RefSeq	XP_017247210.1	PREDICTED: peroxisome biogenesis protein 1 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9FNP1	Peroxisomal ATPase PEX1 OS=Arabidopsis thaliana OX=3702 GN=PEX1 PE=1 SV=2
TrEMBL	A0A165XL52	Peroxin-1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014363 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	13.744128	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	12.000965	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	12.626079	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	12.478086	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	12.675764	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	12.402038	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	10.494452	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	8.999052	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	30.062843	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	29.363911	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	29.689058	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	26.611774	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	26.952723	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	24.481308	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	8.109737	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	8.77939	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	9.886671	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	12.445578	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	11.002404	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	11.878845	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	14.627079	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	12.333016	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	13.554157	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	13.241583	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	11.711122	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	15.353418	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	11.822911	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	13.553199	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	14.246793	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.42733		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	3.185559		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.132575		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	8.062497		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	7.76017		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	7.0438		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	5.327819		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	3.128685		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	4.46402		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	14.692726	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	9.032524	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	6.802492	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	8.240422	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	10.683619	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	16.468746	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	15.690505	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	8.740021	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	17.323204	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	15.544406	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	16.745573	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	17.132301	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg12047
Aizoaceae	Mesembryanthemum crystallinum	2	gene_25098, gene_25100
Amaranthaceae	Atriplex hortensis	1	Ah031790
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg19308, Sbi_jg43876
Amaranthaceae	Salicornia europaea	1	Seu_jg18047
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00014624
Amaranthaceae	Suaeda glauca	2	Sgl65601, Sgl69904
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000014450, gene:ENSEOMG00000019828 ... gene:ENSEOMG00000051190
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.2AG0001070, CQ.Regalona.r1.2BG0002130
Anacardiaceae	Pistacia vera	3	pistato.v30107880, pistato.v30195380, pistato.v30295310
Apiaceae	Apium graveolens	1	Ag3G01834
Arecaceae	Cocos nucifera	1	COCNU_12G000960
Arecaceae	Phoenix dactylifera	1	gene-LOC103719364
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.2379.V1.1, AsparagusV1_06.88.V1.1
Asteraceae	Flaveria trinervia	1	Ftri10G28551
Brassicaceae	Arabidopsis thaliana	1	AT5G08470.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10012497m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp6g34430.v2.2
Brassicaceae	Brassica nigra	2	BniB02g052760.2N, BniB08g003830.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G1659
Casuarinaceae	Casuarina glauca	1	Cgl06G1718
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno03g05620
Dunaliellaceae	Dunaliella salina	1	Dusal.0970s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g20310
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-4664
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.1585
Plantaginaceae	Plantago ovata	3	Pov_00019879, Pov_00023082, Pov_00038518
Plumbaginaceae	Limonium bicolor	1	Lb1G05395
Poaceae	Echinochloa crus-galli	3	AH08.2355, BH08.2505, CH08.2692
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_8AG0640400, gene-QOZ80_8BG0669000
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.5HG0495920.1, HORVU.MOREX.r3.5HG0495930.1 ... HORVU.MOREX.r3.7HG0688690.1
Poaceae	Lolium multiflorum	2	gene-QYE76_030679, gene-QYE76_036245
Poaceae	Oryza coarctata	1	Oco15G014430
Poaceae	Oryza sativa	1	LOC_Os08g44240.1
Poaceae	Paspalum vaginatum	1	gene-BS78_07G224400
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0403396
Poaceae	Sporobolus alterniflorus	3	Chr20G003110, Chr20G003120, Chr29G000510
Poaceae	Thinopyrum elongatum	2	Tel5E01G480200, Tel7E01G479600
Poaceae	Triticum dicoccoides	3	gene_TRIDC5BG048630, gene_TRIDC7AG036330 ... gene_TRIDC7BG027640
Poaceae	Triticum aestivum	6	TraesCS5A02G301500.1, TraesCS5B02G299200.1 ... TraesCS5D02G306600.2, TraesCS7A02G277100.1, TraesCS7B02G174800.1, TraesCS7D02G277100.1
Poaceae	Zea mays	1	Zm00001eb176300_P004
Poaceae	Zoysia japonica	1	nbis-gene-42858
Poaceae	Zoysia macrostachya	1	Zma_g23424
Portulacaceae	Portulaca oleracea	2	evm.TU.LG02.896, evm.TU.LG09.1078
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g14830
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_10_RagTag.1214
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-6856, nbisL1-mrna-6919
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-5924
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-17021
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000004l.358
Rhizophoraceae	Kandelia obovata	1	Maker00004222
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-16356
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-18054
Salicaceae	Populus euphratica	1	populus_peu02837
Solanaceae	Lycium barbarum	1	gene-LOC132627175
Solanaceae	Solanum pennellii	1	gene-LOC107017996
Tamaricaceae	Reaumuria soongarica	1	gene_9793
Tamaricaceae	Tamarix chinensis	1	TC08G0572
Zosteraceae	Zostera marina	1	Zosma06g18910.v3.1