Basic Information
Locus ID:
Ag3G01799
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 150390524 | 150392079 | + | Ag3G01799 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 44,963.88 Da | 45.35 | 115.75 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 11 | 53 | 7.74432E-26 | - |
| Pfam | PF04564 | U-box domain | 7 | 76 | 4.5E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 233 | 388 | 4.41E-12 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 5 | 79 | 1.3E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 86 | 2.2E-28 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 133 | 398 | 2.7E-14 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 10 | 73 | 4.6E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 6 | 80 | 34.199242 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49780.1 | plant U-box 26. | 0 |
| RefSeq | XP_017245100.1 | PREDICTED: U-box domain-containing protein 26-like [Daucus carota subsp. sativus] | 0 |
| Q9FXA4 | U-box domain-containing protein 26 OS=Arabidopsis thaliana OX=3702 GN=PUB26 PE=2 SV=1 | 0 | |
| TrEMBL | A0A165XMG6 | RING-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014333 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.062647 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.763395 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.406607 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.568025 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.164048 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.338346 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.045805 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 8.125438 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 7.515049 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 6.401641 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.289134 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 4.875452 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.96466 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.269562 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.673761 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.880875 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.31077 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.908763 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.650632 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.142323 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.032922 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.598525 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.18725 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.034393 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.509255 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.885447 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.253226 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.68162 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.622576 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.306239 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.411387 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.416903 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.971638 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.685704 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.37868 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.341515 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.452216 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.475118 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.186609 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 20.794136 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.315178 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.718221 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.922787 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 24.277214 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.397793 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.416949 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.544752 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.864884 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17125, jg17126, jg39669 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17929 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027098 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g132670 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13448, Sbi_jg52419 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9431 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013434 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33766, Sgl39078 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000002619 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0022090, CQ.Regalona.r1.6BG0023250 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30200990, pistato.v30201300, pistato.v30201320 |
| Apiaceae | Apium graveolens | 2 | Ag3G01799, Ag7G02192 |
| Arecaceae | Cocos nucifera | 6 | COCNU_01G020700, contig69403781G000010 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103720520, gene-LOC103722209, gene-LOC120113030 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.639.V1.1, AsparagusV1_09.290.V1.1 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g07020 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g12860 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10702 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.884 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014216 |
| Poaceae | Echinochloa crus-galli | 2 | BH09.1129, CH09.1268 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0316950, gene-QOZ80_4BG0348190 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0169630.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_019659, gene-QYE76_019674, gene-QYE76_044106 |
| Poaceae | Oryza coarctata | 1 | Oco08G006300 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g35680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G102100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300414, Pt_Chr0300437 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G012660, Chr25G010950, Chr26G006860, Chr30G010610 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G540200, Tel7E01G685100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG044540, gene_TRIDC2BG047230 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G307000.1, TraesCS2B02G323600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb082390_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-37810, nbis-gene-7639 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19731, Zma_g21310 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2423, evm.TU.LG17.1468 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g18430 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.864 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1049, nbisL1-mrna-971 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14605 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6538 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.675 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012826 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18796 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19692 |
| Salicaceae | Populus euphratica | 2 | populus_peu13658, populus_peu22822 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132639975 |
| Solanaceae | Solanum chilense | 1 | SOLCI004457900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019792 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19619_chr07_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0372 |
| Zosteraceae | Zostera marina | 1 | Zosma05g10970.v3.1 |