Basic Information
Locus ID:
Ag3G01794
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
MRN-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 149285353 | 149295434 | + | Ag3G01794 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 37,037.89 Da | 51.01 | 57.03 | -0.90 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71760.1 | 0 | |
| RefSeq | XP_017246338.1 | PREDICTED: UPF0544 protein C5orf45 homolog [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A162AA95 | Ovule protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014326 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.92964 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.137167 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.198422 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.750847 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.569588 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.489831 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.240578 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.552911 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 7.382387 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 7.574394 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 9.575459 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.194882 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 5.766033 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.472929 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.589127 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.633281 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.111623 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.820732 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.944055 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.255841 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.720424 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.679287 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.446918 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.661438 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.488089 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.140173 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.490007 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.897826 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.64947 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.32241 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.282596 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.302667 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.120966 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.803771 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.367783 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.340633 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.360185 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.540439 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.346918 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.455629 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.455532 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.706846 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.713056 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.504875 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.918311 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.371981 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 9.970255 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.137656 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.246171 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg11460 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_921 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah024713, Ah039106 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g012360 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31720, Sbi_jg57582 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25261 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025107 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl54183, Sgl59489, Sgl59525, Sgl71632 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000035976, gene:ENSEOMG00000050453 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0015530, CQ.Regalona.r1.1BG0010200 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30283310 |
| Apiaceae | Apium graveolens | 1 | Ag3G01794 |
| Arecaceae | Cocos nucifera | 1 | scaffold067243G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120110420 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2974.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G71760.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019840m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g26780.v2.2, SpUn0095_0010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g049580.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1490 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g00660 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1127s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g19300 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1611 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023109 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2977, BH02.3056, CH02.3467 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0031130, gene-QOZ80_1BG0081080 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0285010.1 |
| Poaceae | Oryza coarctata | 2 | Oco01G018750, Oco02G019190 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g51850.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G256300, gene-BS78_04G089800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602910 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr03G014940, Chr08G015050 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G418000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG036330, gene_TRIDC3BG041450 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G244200.1, TraesCS3B02G275800.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb361480_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-26301 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11013 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1056, evm.TU.LG17.1178 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g10910 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.437 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9821 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2274 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18027 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.715 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003607 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18029 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11192 |
| Salicaceae | Populus euphratica | 1 | populus_peu32607 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627398 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016206 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.10064_chr06_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1392 |
| Zosteraceae | Zostera marina | 1 | Zosma05g14360.v3.1 |