halophFGD

Basic Information

Locus ID: Ag3G01783

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: WD repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	146420839	146422234	+	Ag3G01783

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.79	38,691.68 Da	38.56	85.47	-0.31

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	264	299	0.0062	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	172	208	0.056	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	49	302	1.71E-30	IPR036322
Gene3D	G3DSA:2.130.10.10	-	15	349	7.8E-40	IPR015943
SMART	SM00320	WD40_4	259	299	1.2E-5	IPR001680
SMART	SM00320	WD40_4	122	167	0.55	IPR001680
SMART	SM00320	WD40_4	170	208	4.0E-4	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	266	302	9.124694	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	266	302	10.876051	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	286	300	-	IPR019775

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K11805 (DDB1- and CUL4-associated factor 7)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G12910.1	Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11.
RefSeq	XP_017228142.1	PREDICTED: WD repeat-containing protein LWD1-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9LPV9	WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1
TrEMBL	A0A162AAA2	WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000204 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	24.52853	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	8.88777	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	7.080509	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	5.953143	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	5.744875	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	5.950705	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	9.791488	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	9.168916	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	20.353642	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	19.9384	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	21.206547	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	22.40131	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	16.598141	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	17.889629	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	6.920885	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	6.935212	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	7.438795	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	7.155376	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	8.252958	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	4.747077	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	6.860862	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	16.719343	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	17.831417	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	23.682959	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	16.719873	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	8.742556	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	9.844354	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	8.059693	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	8.695661	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	5.335401		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	5.846409		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	7.425063		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	25.795424		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	13.629983		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	20.849298		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	14.438007		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	11.32598		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	10.107024		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	7.733072	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	4.087186	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.427832	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	4.114684	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	8.79535	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	24.636076	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	11.330562	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	6.717418	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	14.714401	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	14.450626	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	9.207042	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	10.064628	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg13822, jg13823, jg20791, jg2115, jg22302
Aizoaceae	Mesembryanthemum crystallinum	2	gene_24956, gene_3376
Amaranthaceae	Atriplex hortensis	2	Ah012439, Ah018479
Amaranthaceae	Beta vulgaris	2	BVRB_3g050980, BVRB_6g146360
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg14952, Sbi_jg42473, Sbi_jg45088, Sbi_jg55766
Amaranthaceae	Salicornia europaea	2	Seu_jg26279, Seu_jg27077
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00002228, GOSA_00017860
Amaranthaceae	Suaeda glauca	4	Sgl01201, Sgl06286, Sgl31808, Sgl37092
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000000242, gene:ENSEOMG00000001676 ... gene:ENSEOMG00000028152, gene:ENSEOMG00000030845, gene:ENSEOMG00000044471
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.3AG0006330, CQ.Regalona.r1.3BG0006390 ... CQ.Regalona.r1.3BG0010500, CQ.Regalona.r1.4BG0010950, CQ.Regalona.r1.6AG0009360, CQ.Regalona.r1.6BG0009920
Apiaceae	Apium graveolens	3	Ag10G02473, Ag3G01783, Ag4G01363
Arecaceae	Cocos nucifera	4	COCNU_02G016230, COCNU_07G008240, COCNU_10G006200 ... COCNU_15G006310
Arecaceae	Phoenix dactylifera	8	gene-LOC103702757, gene-LOC103712797, gene-LOC103712802 ... gene-LOC113461389, gene-LOC120104821, gene-LOC120104822, gene-LOC120107102, gene-LOC120110753
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.2344.V1.1, AsparagusV1_09.1569.V1.1
Asteraceae	Flaveria trinervia	2	Ftri12G21912, Ftri6G08778
Brassicaceae	Arabidopsis thaliana	3	AT1G12910.1, AT3G26640.1, AT5G24520.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10004515m.g.v1.0, Thhalv10005280m.g.v1.0 ... Thhalv10008091m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g11480.v2.2, Sp2g15760.v2.2, Sp2g22830.v2.2
Brassicaceae	Brassica nigra	2	BniB02g007780.2N, BniB02g077350.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq04G0706, Ceq08G0007, Ceq09G1687
Casuarinaceae	Casuarina glauca	3	Cgl04G0802, Cgl08G0004, Cgl09G1823
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno08g00150, gene.Cymno14g04370
Dunaliellaceae	Dunaliella salina	1	Dusal.0338s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate06g02050, gene.Thate08g18480, gene.Thate09g12020
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-4217, nbisL1-mrna-5384
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG05.11, evm.TU.LG05.1291
Plantaginaceae	Plantago ovata	2	Pov_00025742, Pov_00038526
Plumbaginaceae	Limonium bicolor	6	Lb0G37631, Lb1G03995, Lb1G04050, Lb4G23622, Lb6G30666 ... Lb7G33830
Poaceae	Echinochloa crus-galli	6	AH01.2975, AH01.2976, AH07.1995, BH07.1959, BH07.2837 ... CH07.1822
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0132480, gene-QOZ80_2AG0141040 ... gene-QOZ80_2BG0187880, gene-QOZ80_2BG0196650
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.6HG0583670.1.CDS1 ... HORVU.MOREX.r3.6HG0604400.1.CDS1
Poaceae	Lolium multiflorum	2	gene-QYE76_022639, gene-QYE76_024426
Poaceae	Oryza coarctata	4	Oco03G011320, Oco03G018290, Oco04G011710, Oco04G019040
Poaceae	Oryza sativa	2	LOC_Os02g32430.1, LOC_Os02g45810.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G148100, gene-BS78_04G237800
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0203749, Pt_Chr0203754
Poaceae	Sporobolus alterniflorus	8	Chr03G024160, Chr06G005020, Chr06G010830, Chr09G015500 ... Chr09G023380, Chr13G011400, Chr15G006550, Chr15G012410
Poaceae	Thinopyrum elongatum	2	Tel6E01G408000, Tel6E01G482000
Poaceae	Triticum dicoccoides	4	gene_TRIDC6AG028830, gene_TRIDC6AG039930 ... gene_TRIDC6BG034190, gene_TRIDC6BG046810
Poaceae	Triticum aestivum	4	TraesCS6A02G193300.1.cds1, TraesCS6A02G259400.1.cds1 ... TraesCS6B02G221400.3.cds1, TraesCS6B02G286700.1.cds1
Poaceae	Zea mays	2	Zm00001eb242340_P001, Zm00001eb250740_P001
Poaceae	Zoysia japonica	6	nbis-gene-18923, nbis-gene-18924, nbis-gene-20190 ... nbis-gene-20865, nbis-gene-22247, nbis-gene-9140
Poaceae	Zoysia macrostachya	3	Zma_g13597, Zma_g14137, Zma_g16888
Portulacaceae	Portulaca oleracea	3	evm.TU.LG02.1393, evm.TU.LG09.569, evm.TU.LG16.1666
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g26230, gene.Posoc01g36550, gene.Posoc05g00260 ... gene.Posoc06g12100
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.267, evm.TU.Scaffold_1_RagTag.1388 ... evm.TU.Scaffold_2_RagTag.1617, evm.TU.Scaffold_4_RagTag.871
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-14155, nbisL1-mrna-27468, nbisL1-mrna-3613 ... nbisL1-mrna-6211
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-2121, nbisL1-mrna-4470, nbisL1-mrna-7436
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-1522, nbisL1-mrna-19004, nbisL1-mrna-4065
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000005l.92, add.evm.TU.utg000008l.212 ... add.evm.TU.utg000009l.112, add.evm.TU.utg000016l.177
Rhizophoraceae	Kandelia obovata	2	Maker00004814, Maker00016317
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-16922, nbisL1-mrna-17821, nbisL1-mrna-19805 ... nbisL1-mrna-22531
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-13562, nbisL1-mrna-18950, nbisL1-mrna-19349 ... nbisL1-mrna-21795
Salicaceae	Populus euphratica	7	populus_peu12473, populus_peu25893, populus_peu27139 ... populus_peu27925, populus_peu29354, populus_peu31148, populus_peu31165
Solanaceae	Lycium barbarum	3	gene-LOC132628211, gene-LOC132632187, gene-LOC132632188
Solanaceae	Solanum chilense	4	SOLCI004760800, SOLCI005217100, SOLCI005217200 ... SOLCI007523700
Solanaceae	Solanum pennellii	3	gene-LOC107012197, gene-LOC107012387, gene-LOC107015534
Tamaricaceae	Reaumuria soongarica	2	gene_3076, gene_5035
Tamaricaceae	Tamarix chinensis	2	TC01G2453, TC06G2727
Zosteraceae	Zostera marina	6	Zosma02g00280.v3.1, Zosma03g21590.v3.1, Zosma04g11670.v3.1 ... Zosma25g00020.v3.1, Zosma805g00010.v3.1, Zosma94g00030.v3.1