Basic Information
Locus ID:
Ag3G01779
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Transducin WD40 repeat-like superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 145840801 | 145872449 | + | Ag3G01779 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 106,357.98 Da | 43.85 | 88.15 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15873 | R-SNARE_STXBP5_6 | 897 | 952 | 9.32238E-16 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 39 | 598 | 1.17E-23 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 401 | 724 | 1.9E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 7 | 285 | 8.0E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 551 | 589 | 72.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 26 | 66 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 219 | 259 | 2.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 112 | 148 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 400 | 485 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 490 | 540 | 280.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 940 | 961 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35560.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017248538.1 | PREDICTED: uncharacterized protein LOC108219549 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A165XN30 | Lgl_C domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014311 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.953105 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.862819 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.102996 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 12.656941 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 13.17989 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 12.389451 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.95657 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.729902 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.854656 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.862625 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 18.597294 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 13.972201 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.492465 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 11.632683 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.684939 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 26.079536 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.336361 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 25.973007 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 18.215775 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 27.389359 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 28.638725 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.768555 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 11.743552 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 16.603506 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 10.808494 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 25.202326 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 17.874643 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.484325 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 23.418531 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.388281 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.826458 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.449708 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.454349 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.625148 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 11.357957 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.624001 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.58712 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.920052 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.041496 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.649787 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.041963 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 21.720625 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.889642 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 17.67215 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 14.775282 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 17.686829 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.493082 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.559432 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.192084 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.518282 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17246 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13364 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g154190 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg43163, Sbi_jg45759 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11609 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015121 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35407, Sgl40802 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000000048, gene:ENSEOMG00000002965 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0001520 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30210780, pistato.v30212200 |
| Apiaceae | Apium graveolens | 1 | Ag3G01779 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G014570 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720924, gene-LOC120109958 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.239.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G31009 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G35560.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024291m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g33340.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g087620.2N, BniB05g002860.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0054 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0053 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g07610 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g17320 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10421, nbisL1-mrna-228 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2878 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020335 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G37917, Lb0G37918, Lb5G29408 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1937, BH09.2102, CH09.2247 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0307250, gene-QOZ80_4BG0338280 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0187880.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_045571 |
| Poaceae | Oryza coarctata | 2 | Oco07G013220, Oco08G012790 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g47700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G192200 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0205780, Pt_Chr0301641, Pt_Chr0307375, Pt_Chr0505380 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr23G006440, Chr25G005370, Chr26G013020, Chr26G013030 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G685000 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2BG061360 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G404000.1, TraesCS2B02G421900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb073880_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22555, nbis-gene-5558 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20243 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2477, evm.TU.LG23.697 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g15090 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.2195 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16945 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5964 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11644 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1346 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007952 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15768 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-23693, nbisL1-mrna-23694 |
| Salicaceae | Populus euphratica | 2 | populus_peu14030, populus_peu14031 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621837 |
| Solanaceae | Solanum chilense | 1 | SOLCI004954600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010217 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2322 |