Basic Information
Locus ID:
Ag3G01774
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
GPI-GlcNAc transferase complex, PIG-H component
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 144719839 | 144724046 | - | Ag3G01774 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 19,853.66 Da | 38.64 | 131.40 | 0.58 |
Protein Domain:
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35530.1 | phosphatidylinositolglycan-related. | 0 |
| RefSeq | XP_017245095.1 | PREDICTED: uncharacterized protein LOC108216767 isoform X2 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A5B7BQK0 | PIG-H domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_040406 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.273992 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.707695 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.326192 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.918499 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.262059 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.942792 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.95234 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.641452 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 8.458084 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 5.800257 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 7.005614 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.932887 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 5.921628 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.236315 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.855769 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.595152 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.774353 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.490219 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.515814 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.123487 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.021192 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.840695 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.239493 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.084599 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.502799 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.640467 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.198335 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.966895 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.538993 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.381317 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.691002 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.851568 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.681534 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.216385 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.900575 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.820015 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.635668 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.786139 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.176425 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.190648 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.596403 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.13012 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.086886 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.515217 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.63683 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.844901 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.38129 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.919383 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.563284 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.568229 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16942 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8257 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027287 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g135710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12661, Sbi_jg53263 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8645 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010365 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33600, Sgl39151 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000775, gene:ENSEOMG00000002842 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6AG0023820 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30212230 |
| Apiaceae | Apium graveolens | 1 | Ag3G01774 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G005970 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721509 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.465.V1.1, AsparagusV1_07.630.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G12148 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G35530.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026286m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g33310.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g087590.2N, BniB05g002890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0051 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g17170 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g31930 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2881 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003915, Pov_00020833 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G11603, Lb8G36054 |
| Poaceae | Echinochloa crus-galli | 5 | AH05.1099, BH02.550, BH05.1152, CH02.614, CH05.1295 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1BG0059460, gene-QOZ80_5AG0403510 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0025880.1, HORVU.MOREX.r3.3HG0234720.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_050028 |
| Poaceae | Oryza coarctata | 4 | Oco01G002520, Oco02G002580, Oco09G003150, Oco10G003130 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g07212.1, LOC_Os05g07260.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G053700, gene-BS78_09G065100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0501706, Pt_Chr0501754 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G011790, Chr02G019290, Chr03G004820, Chr05G010290 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G207900, Tel3E01G169300 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG014560, gene_TRIDC1BG019470 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G111600.1, TraesCS1B02G131800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb123330_P001, Zm00001eb345970_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6881 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g10010, Zma_g26493, Zma_g27760 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG06.1777 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g34150 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4150, nbisL1-mrna-6244 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17465 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4093 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.411 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016367 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7584 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13528 |
| Salicaceae | Populus euphratica | 3 | populus_peu04754, populus_peu12908, populus_peu12917 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132622610, gene-LOC132623824 |
| Solanaceae | Solanum chilense | 1 | SOLCI007268200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009240 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1730 |