Basic Information
Locus ID:
Ag3G01768
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 144171253 | 144173248 | + | Ag3G01768 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 69,995.97 Da | 33.37 | 95.10 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12854 | PPR repeat | 379 | 411 | 7.4E-8 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 461 | 484 | 0.24 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 424 | 449 | 0.0061 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 245 | 269 | 0.14 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 487 | 516 | 2.1E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 73 | 100 | 0.51 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 207 | 240 | 7.3E-12 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 313 | 360 | 3.3E-17 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 525 | 571 | 1.5E-10 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 141 | 240 | 1.7E-19 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 306 | 378 | 3.3E-22 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 379 | 450 | 7.5E-10 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 456 | 618 | 5.2E-37 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 241 | 305 | 2.4E-9 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 490 | 522 | 2.2E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 351 | 383 | 8.9E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 561 | 594 | 1.4E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 214 | 241 | 3.6E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 179 | 213 | 7.2E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 526 | 558 | 1.2E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 385 | 414 | 8.5E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 315 | 349 | 6.6E-9 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 212 | 246 | 10.829822 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 348 | 382 | 11.91499 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 488 | 522 | 11.662881 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 313 | 347 | 13.08785 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 177 | 211 | 10.040608 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 558 | 592 | 11.180584 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 523 | 557 | 11.377887 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 383 | 413 | 10.270796 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17525.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_017244742.1 | PREDICTED: pentatricopeptide repeat-containing protein At2g17525, mitochondrial [Daucus carota subsp. sativus] | 0 |
| Q84VG6 | Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g17525 PE=2 SV=2 | 0 | |
| TrEMBL | A0A165XN86 | Protein PIN-LIKES 7 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014305 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.392308 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.788787 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.2985 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.640677 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.259594 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.763741 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.536044 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.00108 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 3.029366 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 2.54463 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 3.1082 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 3.961383 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 4.053209 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.909517 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.537865 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.752976 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.932362 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.023749 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.043864 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.72782 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.13094 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.970869 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.493474 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.820272 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.314087 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.992348 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.887293 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.064151 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.013458 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.194812 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.938178 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.287987 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.050868 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.211143 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.415048 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.200485 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.655798 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.911221 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.727447 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.899986 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.674677 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.086981 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.160852 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.091507 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.945698 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.8245 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.633934 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.431621 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.351551 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.555673 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34662 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6497 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018177 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056590 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15202, Sbi_jg56024 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26503 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027749 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02222, Sgl07378 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000030064, gene:ENSEOMG00000045211 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0009180, CQ.Regalona.r1.3BG0009360 |
| Apiaceae | Apium graveolens | 1 | Ag3G01768 |
| Arecaceae | Cocos nucifera | 1 | scaffold020636G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120103774 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.429.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G22357 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G17525.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022597m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g30890.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g065500.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0723 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g08310 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g13010 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2888 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013333 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb8G36056, Lb8G36059 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1654, evm.TU.LG11.1007 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g15220 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.2202 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16939 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5957 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11639 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.559 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008315 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-23116 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23702 |
| Salicaceae | Populus euphratica | 1 | populus_peu14041 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610154 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031224 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25127_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0871 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23520.v3.1 |