Basic Information
Locus ID:
Ag3G01752
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 139486460 | 139488958 | - | Ag3G01752 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 65,387.29 Da | 37.12 | 86.14 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01453 | D-mannose binding lectin | 78 | 153 | 1.2E-14 | IPR001480 |
| Pfam | PF00954 | S-locus glycoprotein domain | 209 | 289 | 1.3E-6 | IPR000858 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 64 | 184 | 1.03E-23 | IPR036426 |
| Gene3D | G3DSA:2.90.10.10 | - | 19 | 137 | 9.6E-15 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 441 | 548 | 1.0E-8 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 138 | 257 | 1.6E-8 | IPR036426 |
| SMART | SM00108 | blect_4 | 25 | 139 | 4.8E-11 | IPR001480 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 19 | 138 | 11.94196 | IPR001480 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 607 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 597 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34300.1 | lectin protein kinase family protein. | 0 |
| RefSeq | XP_017247180.1 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Daucus carota subsp. sativus] | 0 |
| Q9XID3 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 OS=Arabidopsis thaliana OX=3702 GN=At1g34300 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165XP51 | Receptor-like serine/threonine-protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014271 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.040619 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.414002 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.351128 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.578425 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.856079 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.737562 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.974506 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.791278 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 27.646755 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 26.863121 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 29.153028 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 20.929598 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 20.474049 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.416895 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.975526 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 12.588349 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.978836 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 25.532764 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.002924 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 26.997318 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 30.505692 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.989903 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.158762 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.454466 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 11.598991 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.952399 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 15.190478 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.547953 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 9.826882 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 8.9872 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.917284 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 13.449121 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 23.919935 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 15.929507 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 23.354418 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 22.230787 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 11.593506 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 15.130966 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.585886 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 30.715881 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 15.816647 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 38.982178 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 33.004215 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 39.805969 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 29.705456 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 33.285107 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 40.092064 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.075832 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.765454 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.034519 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg12158, jg23214, jg23216, jg23217, jg23218 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_23417, gene_23418, gene_23419 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah022619, Ah022629, Ah022634 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g000640 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg29410, Sbi_jg29411, Sbi_jg3651 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg6327, Seu_jg6328 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000798, GOSA_00000799 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl12008, Sgl12009, Sgl12010, Sgl15985, Sgl15986 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000013109, gene:ENSEOMG00000033957 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0000670, CQ.Regalona.r1.1AG0000680 ... |
| Apiaceae | Apium graveolens | 1 | Ag3G01752 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G019610 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702673 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G33827 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G34300.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10006801m.g.v1.0, Thhalv10027652m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g29520.v2.2, Sp6g07970.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB04g053120.2N, BniB04g058220.2N, BniB07g015560.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1538 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1673 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g13860 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12218, nbisL1-mrna-5136, nbisL1-mrna-5137 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1486 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00021786, Pov_00037734 |
| Poaceae | Echinochloa crus-galli | 2 | AH01.514, BH01.224 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0209090, gene-QOZ80_3BG0254220 |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.2HG0114830.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_060339 |
| Poaceae | Oryza coarctata | 2 | Oco05G028440, Oco06G029470 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g62180.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G017900 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0106103, Pt_Chr0106153, Pt_Chr0106154 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G032230, Chr07G031270, Chr12G032310 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G805000, Tel5E01G805200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG052940, gene_TRIDC5BG077590 |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G353100.1.cds1, TraesCS4A02G353300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb063900_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15608, nbis-gene-16702 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g2410, Zma_g2411, Zma_g91 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG04.1975, evm.TU.LG04.1976, evm.TU.LG06.356 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g17110 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_7_RagTag.1286, evm.TU.Scaffold_7_RagTag.1287 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-18473, nbisL1-mrna-18474, nbisL1-mrna-18527 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-1572, nbisL1-mrna-2256, nbisL1-mrna-7762 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-13258, nbisL1-mrna-13259, nbisL1-mrna-18048 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000002l.122, add.evm.TU.utg000002l.123 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011907 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-20319, nbisL1-mrna-20320, nbisL1-mrna-20541 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-18495, nbisL1-mrna-18496, nbisL1-mrna-18702 |
| Salicaceae | Populus euphratica | 1 | populus_peu16662 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627094 |
| Solanaceae | Solanum chilense | 1 | SOLCI000041400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005025 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_649, gene_650 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2311, TC03G2313 |