halophFGD

Basic Information

Locus ID: Ag3G01737

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	136024818	136025360	+	Ag3G01737

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.93	8,359.91 Da	39.70	141.37	0.96

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID

Best hit

Source	Best Hit ID	Description	E-value

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	14.801199	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	11.60518	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	13.735061	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	15.622221	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	11.404375	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	14.931211	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	13.585758	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	9.547621	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	37.81802	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	37.204937	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	41.010063	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	51.612881	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	44.597542	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	45.72823	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	34.623035	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	44.942081	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	38.203747	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	27.958536	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	34.619114	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	29.692844	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	30.677773	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	52.977489	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	38.700481	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	39.99585	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	53.303745	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	40.291267	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	38.534157	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	27.507494	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	33.395859	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	14.800678		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	19.122032		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	14.977389		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	34.565723		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	37.814812		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	29.605309		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	27.187239		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	14.490649		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	25.283583		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	14.687728	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	17.747204	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	7.72579	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	54.628109	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	40.034821	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	51.801041	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	69.856285	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	58.23999	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	58.317505	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	45.426155	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	37.268761	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	32.956154	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg16997, jg17947, jg20106, jg25107
Aizoaceae	Mesembryanthemum crystallinum	2	gene_23683, gene_9023
Amaranthaceae	Atriplex hortensis	2	Ah014440, Ah028610
Amaranthaceae	Beta vulgaris	2	BVRB_6g135630, BVRB_8g195270
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg12666, Sbi_jg24854, Sbi_jg26811, Sbi_jg33755 ... Sbi_jg53257, Sbi_jg8718
Amaranthaceae	Salicornia europaea	4	Seu_jg19886, Seu_jg19888, Seu_jg8447, Seu_jg8649
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00007898, GOSA_00010360, GOSA_00011695
Amaranthaceae	Suaeda glauca	9	Sgl33596, Sgl33786, Sgl39142, Sgl39146, Sgl42108, Sgl46879 ... Sgl73549, Sgl73562, Sgl77070
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000002120, gene:ENSEOMG00000004916 ... gene:ENSEOMG00000007234, gene:ENSEOMG00000010563, gene:ENSEOMG00000027397, gene:ENSEOMG00000035034, gene:ENSEOMG00000037176, gene:ENSEOMG00000038115, gene:ENSEOMG00000045405
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.6AG0023860, CQ.Regalona.r1.6BG0025190 ... CQ.Regalona.r1.7AG0007650, CQ.Regalona.r1.8AG0021080, CQ.Regalona.r1.8BG0021330, CQ.Regalona.r1.9BG0007710
Anacardiaceae	Pistacia vera	5	pistato.v30131350, pistato.v30172630, pistato.v30197680 ... pistato.v30255700, pistato.v30255740
Apiaceae	Apium graveolens	5	Ag2G02799, Ag3G01736, Ag3G01737, Ag4G02475, Ag9G01011
Arecaceae	Cocos nucifera	6	COCNU_02G019370, COCNU_02G019380, COCNU_03G006410 ... COCNU_06G000070, COCNU_11G013340, COCNU_14G000370
Arecaceae	Phoenix dactylifera	5	gene-LOC103705558, gene-LOC103711886, gene-LOC103713093 ... gene-LOC103715512, gene-LOC103721143
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.2388.V1.1, AsparagusV1_03.1743.V1.1 ... AsparagusV1_06.917.V1.1, AsparagusV1_08.689.V1.1
Asteraceae	Flaveria trinervia	4	Ftri17G06409, Ftri3G32363, Ftri4G08368, Ftri4G11980
Brassicaceae	Arabidopsis thaliana	3	AT1G11020.1, AT1G50440.1, AT2G22120.2
Brassicaceae	Eutrema salsugineum	3	Thhalv10000252m.g.v1.0, Thhalv10008262m.g.v1.0 ... Thhalv10011737m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g09710.v2.2, Sp1g37270.v2.2, Sp4g01140.v2.2
Brassicaceae	Brassica nigra	6	BniB01g022030.2N, BniB02g006010.2N, BniB02g017880.2N ... BniB03g004220.2N, BniB04g028630.2N, BniB06g030750.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G1009, Ceq06G0679, Ceq06G1786
Casuarinaceae	Casuarina glauca	3	Cgl02G1055, Cgl06G0704, Cgl06G1852
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g08540, gene.Cymno05g10860, gene.Cymno16g00230
Dunaliellaceae	Dunaliella salina	1	Dusal.0577s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g12020, gene.Thate03g20270, gene.Thate07g07050
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-6737, nbisL1-mrna-7448
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.699, evm.TU.LG02.721, evm.TU.LG07.1007
Plantaginaceae	Plantago ovata	6	Pov_00011387, Pov_00020906, Pov_00033904, Pov_00034031 ... Pov_00034064, Pov_00041385
Plumbaginaceae	Limonium bicolor	4	Lb6G30136, Lb6G30346, Lb6G32653, Lb8G35931
Poaceae	Echinochloa crus-galli	17	AH02.2301, AH02.2302, AH04.1891, AH07.292, AH08.1403 ... BH02.2319, BH02.2406, BH02.2407, BH04.1934, BH06.44, BH07.387, BH08.1639, CH02.2485, CH02.2581, CH03.4529, CH04.2265, CH08.1487
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_1AG0024140, gene-QOZ80_1BG0073730 ... gene-QOZ80_1BG0074860, gene-QOZ80_2AG0100780, gene-QOZ80_2BG0154040, gene-QOZ80_8AG0628590, gene-QOZ80_8BG0657150, gene-QOZ80_9AG0688520, gene-QOZ80_9BG0716640
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0368640.1, HORVU.MOREX.r3.6HG0554540.1 ... HORVU.MOREX.r3.7HG0693030.1
Poaceae	Oryza coarctata	7	Oco02G014600, Oco03G001810, Oco04G001680, Oco15G007490 ... Oco16G007240, Oco21G008270, Oco22G009510
Poaceae	Oryza sativa	4	LOC_Os01g42500.1, LOC_Os02g03950.3, LOC_Os08g29590.1 ... LOC_Os11g39130.1
Poaceae	Paspalum vaginatum	5	gene-BS78_03G183800, gene-BS78_03G192000 ... gene-BS78_04G028500, gene-BS78_05G201600, gene-BS78_07G114500
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0101160, Pt_Chr0104682, Pt_Chr0107630, Pt_Chr0201396 ... Pt_Chr0201425, Pt_Chr0403113
Poaceae	Sporobolus alterniflorus	11	Chr02G015700, Chr06G035330, Chr07G015060, Chr0G011470 ... Chr0G011800, Chr15G026660, Chr16G004920, Chr17G004360, Chr17G012890, Chr20G007010, Chr31G007720
Poaceae	Thinopyrum elongatum	3	Tel4E01G236900, Tel6E01G220500, Tel7E01G494000
Poaceae	Triticum dicoccoides	6	gene_TRIDC4AG023800, gene_TRIDC4BG025170 ... gene_TRIDC6AG012370, gene_TRIDC6BG017590, gene_TRIDC7AG038140, gene_TRIDC7BG027910
Poaceae	Triticum aestivum	9	TraesCS4A02G156600.1, TraesCS4B02G164000.1 ... TraesCS4D02G152900.1, TraesCS6A02G096200.2, TraesCS6B02G124600.2, TraesCS6D02G087300.1, TraesCS7A02G283700.3, TraesCS7B02G176700.1, TraesCS7D02G282300.1
Poaceae	Zea mays	5	Zm00001eb055230_P001, Zm00001eb115010_P001 ... Zm00001eb161850_P001, Zm00001eb167260_P001, Zm00001eb231340_P001
Poaceae	Zoysia japonica	3	nbis-gene-29277, nbis-gene-43123, nbis-gene-50675
Poaceae	Zoysia macrostachya	5	Zma_g14904, Zma_g18171, Zma_g19041, Zma_g24013, Zma_g8197
Portulacaceae	Portulaca oleracea	8	evm.TU.LG03.1207, evm.TU.LG05.693, evm.TU.LG12.545 ... evm.TU.LG16.1471, evm.TU.LG19.205, evm.TU.LG23.1150, evm.TU.LG25.626, evm.TU.LG26.192
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g23660, gene.Posoc03g15460, gene.Posoc09g12200
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_3_RagTag.1038
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-13176, nbisL1-mrna-13203, nbisL1-mrna-19847 ... nbisL1-mrna-965
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-3734, nbisL1-mrna-6396, nbisL1-mrna-837
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-13600, nbisL1-mrna-16768, nbisL1-mrna-2304
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000002l.59, evm.TU.utg000019l.620 ... evm.TU.utg000033l.245
Rhizophoraceae	Kandelia obovata	3	Maker00002246, Maker00011799, Maker00014518
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-13255, nbisL1-mrna-16526, nbisL1-mrna-3326
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-12366, nbisL1-mrna-14740, nbisL1-mrna-1727
Salicaceae	Populus euphratica	8	populus_peu05114, populus_peu05964, populus_peu11959 ... populus_peu13830, populus_peu13831, populus_peu17876, populus_peu19824, populus_peu22979
Solanaceae	Lycium barbarum	6	gene-LOC132613583, gene-LOC132615205, gene-LOC132633595 ... gene-LOC132640501, gene-LOC132640503, gene-LOC132640931
Solanaceae	Solanum chilense	2	SOLCI000219900, SOLCI006443100
Solanaceae	Solanum pennellii	4	gene-LOC107015009, gene-LOC107015882, gene-LOC107016067 ... gene-LOC107019021
Tamaricaceae	Reaumuria soongarica	3	STRG.10091_chr06_-, STRG.11821_chr02_-, gene_16739
Tamaricaceae	Tamarix chinensis	3	TC09G0004, TC10G1648, TC10G1874
Zosteraceae	Zostera marina	2	Zosma02g19470.v3.1, Zosma05g28280.v3.1