halophFGD

Basic Information

Locus ID: Ag3G01685

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Phospho-2-dehydro-3-deoxyheptonate aldolase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	127789311	127793397	+	Ag3G01685

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.39	57,157.51 Da	40.05	81.23	-0.35

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01474	Class-II DAHP synthetase family	58	494	4.4E-198	IPR002480
SUPERFAMILY	SSF51569	Aldolase	51	498	3.08E-200	-
Gene3D	G3DSA:3.20.20.70	Aldolase class I	235	499	1.4E-110	IPR013785
TIGRFAM	TIGR01358	DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase	58	500	1.1E-227	IPR002480

Gene Ontology

Biological Process:

GO:0009073 (aromatic amino acid family biosynthetic process)

Molecular Function:

GO:0003824 (catalytic activity) GO:0003849 (3-deoxy-7-phosphoheptulonate synthase activity)

KEGG Pathway

KO Term:

K01626 (3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54])

Pathway:

ko00400 (Phenylalanine, tyrosine and tryptophan biosynthesis) map00400 (Phenylalanine, tyrosine and tryptophan biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids) ko02024 (Quorum sensing) map02024 (Quorum sensing)

Module:

M00022 (Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate)

Reaction:

R01826 (Phosphoenolpyruvate + D-Erythrose 4-phosphate + H2O <=> 2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate + Orthophosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G39980.1	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1. Encodes a 2-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase, which catalyzes the first committed step in aromatic amino acid biosynthesis. Gene expression is induced by wounding and pathogenic bacteria Pseudomonas syringae.
RefSeq	XP_017246864.1	PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic [Daucus carota subsp. sativus]
Swiss-Prot	P37822	Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum tuberosum OX=4113 GN=SHKB PE=2 SV=1
TrEMBL	A0A165XR42	Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014209 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	108.557869	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	103.330055	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	142.082047	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	128.651566	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	125.267311	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	203.567932	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	189.403351	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	188.819275	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	180.516495	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	184.857819	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	175.498825	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	239.039047	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	231.694962	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	218.06427	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	28.440958	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	45.177608	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	37.04155	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	66.626381	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	34.002045	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	72.297028	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	74.125267	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	110.639526	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	131.18689	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	104.706711	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	75.021088	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	76.961395	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	59.737747	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	48.31815	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	66.151398	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	12.030928		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	14.356023		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	20.317019		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	56.879742		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	71.376648		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	68.054565		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	21.646345		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	13.981736		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	13.198699		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	74.60434	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	31.391094	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	30.50201	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	122.760895	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	61.066654	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	35.944004	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	26.01964	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	114.187973	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	44.731918	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	100.179565	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	69.361732	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	63.589272	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg20085, jg22645, jg26342, jg31107
Aizoaceae	Mesembryanthemum crystallinum	2	gene_21814, gene_23335
Amaranthaceae	Atriplex hortensis	2	Ah009818, Ah023832
Amaranthaceae	Beta vulgaris	2	BVRB_1g008670, BVRB_9g215440
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg11250, Sbi_jg29355, Sbi_jg3582, Sbi_jg46220
Amaranthaceae	Salicornia europaea	3	Seu_jg20551, Seu_jg20554, Seu_jg6372
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000841, GOSA_00005414
Amaranthaceae	Suaeda glauca	5	Sgl11809, Sgl11970, Sgl17299, Sgl56311, Sgl61819
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000013634, gene:ENSEOMG00000018766 ... gene:ENSEOMG00000033162, gene:ENSEOMG00000038396, gene:ENSEOMG00000049603, gene:ENSEOMG00000052125
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0011520, CQ.Regalona.r1.1BG0014440 ... CQ.Regalona.r1.7BG0004180, CQ.Regalona.r1.9AG0020470
Anacardiaceae	Pistacia vera	3	pistato.v30041210, pistato.v30101690, pistato.v30203280
Apiaceae	Apium graveolens	3	Ag2G00587, Ag3G01011, Ag3G01685
Arecaceae	Cocos nucifera	5	COCNU_02G007240, COCNU_05G005580, COCNU_13G003270 ... contig69148513G000010, scaffold001962G000050
Arecaceae	Phoenix dactylifera	7	gene-LOC103697540, gene-LOC103701771, gene-LOC103707951 ... gene-LOC103710778, gene-LOC103717958, gene-LOC120104018, gene-LOC120105219
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.1847.V1.1, AsparagusV1_03.288.V1.1 ... AsparagusV1_07.2738.V1.1
Asteraceae	Flaveria trinervia	5	Ftri10G07796, Ftri16G23259, Ftri2G05729, Ftri8G19921 ... Ftri9G17569
Brassicaceae	Arabidopsis thaliana	3	AT1G22410.1, AT4G33510.1, AT4G39980.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10007380m.g.v1.0, Thhalv10024923m.g.v1.0 ... Thhalv10024959m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g19890.v2.2, Sp7g31250.v2.2, Sp7g35890.v2.2
Brassicaceae	Brassica nigra	5	BniB03g019840.2N, BniB03g057640.2N, BniB04g037510.2N ... BniB05g000100.2N, BniB05g004570.2N
Casuarinaceae	Casuarina equisetifolia	8	Ceq01G0539, Ceq03G1318, Ceq06G1954, Ceq08G1206, Ceq08G1215 ... Ceq08G1216, Ceq09G0634, Ceq09G0642
Casuarinaceae	Casuarina glauca	6	Cgl01G0628, Cgl03G1420, Cgl06G2047, Cgl06G2062, Cgl09G0679 ... Cgl09G0691
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g02590, gene.Cymno09g04480
Dunaliellaceae	Dunaliella salina	1	Dusal.0249s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g24320, gene.Thate03g06120, gene.Thate05g27460
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-2094
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG02.2496, evm.TU.LG06.1082, evm.TU.LG08.1252
Plantaginaceae	Plantago ovata	4	Pov_00002117, Pov_00020984, Pov_00037229, Pov_00039775
Plumbaginaceae	Limonium bicolor	5	Lb1G05897, Lb1G05898, Lb1G05916, Lb2G15382, Lb3G18169
Poaceae	Echinochloa crus-galli	11	AH01.2865, AH01.3425, AH03.3743, AH08.1869, BH01.3211 ... BH01.3779, BH03.4020, CH01.3442, CH01.4029, CH03.4291, CH08.2142
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_2AG0117050, gene-QOZ80_2BG0170730 ... gene-QOZ80_3AG0250750, gene-QOZ80_3BG0277450, gene-QOZ80_7AG0577730, gene-QOZ80_7BG0609060, gene-QOZ80_8AG0635000
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0057520.1, HORVU.MOREX.r3.2HG0123880.1
Poaceae	Lolium multiflorum	5	gene-QYE76_031027, gene-QYE76_031035, gene-QYE76_037262 ... gene-QYE76_039504, gene-QYE76_067520
Poaceae	Oryza coarctata	8	Oco05G015030, Oco06G015460, Oco13G013030, Oco14G013740 ... Oco15G012300, Oco16G010290, Oco19G010450, Oco20G010260
Poaceae	Oryza sativa	4	LOC_Os03g27230.1, LOC_Os07g42960.1, LOC_Os08g37790.1 ... LOC_Os10g41480.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G282500, gene-BS78_01G332500 ... gene-BS78_02G354700, gene-BS78_07G170600
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0403297
Poaceae	Sporobolus alterniflorus	12	Chr01G025080, Chr04G012710, Chr07G012110, Chr16G016190 ... Chr17G015530, Chr19G001990, Chr19G002000, Chr24G015000, Chr27G015230, Chr27G016910, Chr28G011980, Chr29G003460
Poaceae	Thinopyrum elongatum	3	Tel1E01G367700, Tel2E01G323100, Telscf30201G000100
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG032620, gene_TRIDC1BG038000 ... gene_TRIDC2AG020680, gene_TRIDC2BG024570
Poaceae	Triticum aestivum	6	TraesCS1B02G229700.1, TraesCS1D02G218300.1 ... TraesCS2A02G163600.1, TraesCS2B02G189300.1, TraesCS2D02G170400.1, TraesCS7A02G412900.1
Poaceae	Zea mays	6	Zm00001eb018960_P001, Zm00001eb040990_P002 ... Zm00001eb109620_P001, Zm00001eb199100_P001, Zm00001eb218070_P001, Zm00001eb327800_P001
Poaceae	Zoysia japonica	4	nbis-gene-17281, nbis-gene-32982, nbis-gene-338 ... nbis-gene-52195
Poaceae	Zoysia macrostachya	4	Zma_g24270, Zma_g3512, Zma_g5579, Zma_g6880
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.1944, evm.TU.LG04.1813, evm.TU.LG06.557 ... evm.TU.LG09.14
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g18570, gene.Posoc02g29610, gene.Posoc04g16070
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_14_RagTag.434, evm.TU.Scaffold_7_RagTag.979 ... evm.TU.Scaffold_8_RagTag.760
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-17495, nbisL1-mrna-17922, nbisL1-mrna-18985
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10874, nbisL1-mrna-18028, nbisL1-mrna-3849
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-20488, nbisL1-mrna-6809, nbisL1-mrna-8301
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000002l.745, evm.TU.utg000007l.115 ... evm.TU.utg000018l.512
Rhizophoraceae	Kandelia obovata	1	Maker00003704
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-13683, nbisL1-mrna-13684, nbisL1-mrna-16190 ... nbisL1-mrna-2994, nbisL1-mrna-8225
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-10664, nbisL1-mrna-20306, nbisL1-mrna-9967
Salicaceae	Populus euphratica	6	populus_peu03076, populus_peu13750, populus_peu14588 ... populus_peu22907, populus_peu32244, populus_peu37139
Solanaceae	Lycium barbarum	3	gene-LOC132598806, gene-LOC132625731, gene-LOC132627551
Solanaceae	Solanum chilense	3	SOLCI000122500, SOLCI003723600, SOLCI006159500
Solanaceae	Solanum pennellii	3	gene-LOC107004500, gene-LOC107008091, gene-LOC107017083
Tamaricaceae	Reaumuria soongarica	4	STRG.12929_chr02_-, STRG.16578_chr06_-, STRG.9052_chr03_- ... gene_1282
Tamaricaceae	Tamarix chinensis	4	TC03G1603, TC09G0046, TC10G0032, TC11G0800
Zosteraceae	Zostera marina	3	Zosma01g03130.v3.1, Zosma01g09120.v3.1, Zosma06g16950.v3.1