Basic Information
Locus ID:
Ag3G01657
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Catalyzes the third of the four reactions of the long- chain fatty acids elongation cycle. This endoplasmic reticulum- bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors of membrane lipids and lipid mediators
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 119037889 | 119042512 | + | Ag3G01657 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 24,658.59 Da | 49.29 | 106.96 | 0.35 |
Protein Domain:
KEGG Pathway
Pathway:
ko00062 (Fatty acid elongation)
map00062 (Fatty acid elongation)
ko01040 (Biosynthesis of unsaturated fatty acids)
map01040 (Biosynthesis of unsaturated fatty acids)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01212 (Fatty acid metabolism)
map01212 (Fatty acid metabolism)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10480.1 | Protein-tyrosine phosphatase-like, PTPLA. Protein tyrosine phosphatase-like involved in cell division and differentiation. Interacts with CDKA;1 only in its phosphorylated form, preventing dephosphorylation. Overexpression slowed down cell division in suspension cell cultures at the G2-to-M transition and early mitosis and inhibited Arabidopsis seedling growth. Localized in the cytoplasm of dividing cells but moved into the nucleus upon cell differentiation. Based on complementation of yeast mutant PAS2 has acyl-CoA dehydratase activity. It interacts with CER10, a component of the microsomal fatty acid elongase complex, suggesting a role in synthesis of VLCFAs (very long chain fatty acids). | 0 |
| RefSeq | XP_017245969.1 | PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Daucus carota subsp. sativus] | 0 |
| Q7XSZ4 | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica OX=39947 GN=PAS2A PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J5BZI8 | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Nyssa sinensis OX=561372 GN=F0562_003152 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 14.333286 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 17.302382 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 19.732962 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 25.4657 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 29.404646 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.72327 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.337379 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.328971 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 75.012314 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 73.357635 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 77.006149 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 84.519661 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 87.30294 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 83.472 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 107.488724 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 154.557831 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 124.669861 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 55.730885 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 72.817932 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 45.740074 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 38.577049 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 59.480003 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 66.2229 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 74.098946 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 67.844566 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 62.667549 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 73.929794 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 47.968826 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 69.535469 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.240201 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 10.737541 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.737518 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 12.869337 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 31.752729 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 19.336178 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 11.92095 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 14.110945 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.575055 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 28.620884 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 20.371662 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.211764 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 22.722971 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 17.648096 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 10.238057 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 15.316925 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 30.20248 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 23.438295 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 83.33139 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 77.705246 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 74.745613 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg28772, jg981 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24166 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027189 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g133690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12563, Sbi_jg53372 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8555 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010457 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33694, Sgl39006 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000776, gene:ENSEOMG00000002824 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0022900, CQ.Regalona.r1.6BG0024210 |
| Apiaceae | Apium graveolens | 1 | Ag3G01657 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G015140 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703452 |
| Asparagaceae | Asparagus officinalis | 6 | AsparagusV1_05.1363.V1.1, AsparagusV1_05.3558.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G13914, Ftri6G32666 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G10480.3 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014620m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g32950.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g051430.2N, BniB08g004710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0310 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0339 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g00140 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0248s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g30260 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2179 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2700 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007498, Pov_00028766 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27914 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.661, AH02.663, BH02.668, BH02.669, CH02.764, CH02.765 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0009760, gene-QOZ80_1AG0009770 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0230910.1, HORVU.MOREX.r3.3HG0230930.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_018651, gene-QYE76_048590, gene-QYE76_058390 ... |
| Poaceae | Oryza coarctata | 5 | Oco01G001960, Oco01G001970, Oco02G001950, Oco02G001960 ... |
| Poaceae | Oryza sativa | 7 | LOC_Os01g05694.1, LOC_Os01g05710.1, LOC_Os01g05720.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G063900, gene-BS78_03G064000 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0205832, Pt_Chr0205833, Pt_Chr0205834, Pt_Chr0601176 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G023470, Chr03G004340 |
| Poaceae | Thinopyrum elongatum | 9 | Tel3E01G136600, Tel3E01G137200, Tel3E01G899100 ... |
| Poaceae | Triticum dicoccoides | 9 | gene_TRIDC3AG008980, gene_TRIDC3AG075370 ... |
| Poaceae | Triticum aestivum | 17 | TraesCS1D02G051800.1, TraesCS3A02G075100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb124340_P001, Zm00001eb335910_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13029, nbis-gene-6947 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9971 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1463, evm.TU.LG12.129 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g28700 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1113 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-871 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7085 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2365 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.576 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001920 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6142 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1800 |
| Salicaceae | Populus euphratica | 1 | populus_peu23715 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132614571, gene-LOC132614748 |
| Solanaceae | Solanum chilense | 2 | SOLCI004953200, SOLCI005252800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002947, gene-LOC107018380 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.16418_chr06_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0202 |
| Zosteraceae | Zostera marina | 1 | Zosma05g30750.v3.1 |