Basic Information
Locus ID:
Ag3G01591
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
L-type lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 105492196 | 105496859 | + | Ag3G01591 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 78,073.86 Da | 36.66 | 92.70 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 47 | 295 | 2.51921E-74 | IPR001220 |
| CDD | cd14066 | STKc_IRAK | 376 | 642 | 9.28585E-90 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 375 | 579 | 6.3E-46 | IPR001245 |
| Pfam | PF00139 | Legume lectin domain | 53 | 298 | 6.0E-58 | IPR001220 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 49 | 298 | 1.31E-53 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 352 | 642 | 1.35E-75 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 355 | 447 | 5.8E-32 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 43 | 306 | 1.6E-62 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 448 | 646 | 4.2E-55 | - |
| SMART | SM00220 | serkin_6 | 370 | 629 | 4.1E-28 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 370 | 651 | 36.852299 | IPR000719 |
| ProSitePatterns | PS00307 | Legume lectins beta-chain signature. | 169 | 175 | - | IPR019825 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 376 | 400 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 493 | 505 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06740.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_017247479.1 | PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Daucus carota subsp. sativus] | 0 |
| Q9FG33 | Probable L-type lectin-domain containing receptor kinase S.5 OS=Arabidopsis thaliana OX=3702 GN=LECRKS5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A162ABR9 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014128 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.953385 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.697407 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.855158 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.17655 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.675578 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.18459 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.549647 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.159494 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 27.617523 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 32.766075 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 26.812111 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.912302 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 11.77023 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.942164 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 60.082378 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 68.87587 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 29.045929 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 58.644821 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 55.99015 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 88.254555 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 69.05191 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 55.570812 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 73.725327 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 60.716393 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 57.931194 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 39.58791 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 34.678452 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 24.582556 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 30.375278 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 21.554892 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 20.614374 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 19.190132 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 33.590534 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 19.563442 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 51.835255 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 39.168617 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 18.584333 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 32.580662 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 45.339489 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 39.38612 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 22.783796 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 197.623184 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 205.669876 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 92.912651 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 99.380249 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 167.022751 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 66.587151 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 29.287058 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.838729 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 19.260828 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg19944, jg20153, jg30962, jg30963, jg30965 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_19106, gene_8236 |
| Amaranthaceae | Atriplex hortensis | 5 | Ah021472, Ah021473, Ah021474, Ah021482, Ah026809 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g139600 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13770, Sbi_jg52144 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9693 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017505 |
| Amaranthaceae | Suaeda glauca | 9 | Sgl02594, Sgl02595, Sgl07753, Sgl07754, Sgl33298, Sgl38524 ... |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000001919, gene:ENSEOMG00000002512 ... |
| Amaranthaceae | Chenopodium quinoa | 7 | CQ.Regalona.r1.3AG0019500, CQ.Regalona.r1.3AG0019510 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30105570, pistato.v30212580 |
| Apiaceae | Apium graveolens | 2 | Ag3G01472, Ag3G01591 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G004260, COCNU_08G004270 |
| Arecaceae | Phoenix dactylifera | 6 | gene-LOC103713890, gene-LOC103713892, gene-LOC120103905 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G22690 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G06740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012919m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g36110.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g054040.2N |
| Casuarinaceae | Casuarina equisetifolia | 5 | Ceq04G0236, Ceq04G0760, Ceq04G1173, Ceq06G0006, Ceq07G1913 |
| Casuarinaceae | Casuarina glauca | 5 | Cgl04G0329, Cgl04G0871, Cgl04G1332, Cgl06G0008, Cgl07G2084 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g08200 |
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate01g31350, gene.Thate01g31370, gene.Thate05g06560 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11049, nbisL1-mrna-8491 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2914, evm.TU.LG08.471 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020290 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G06086, Lb1G06090, Lb1G06091 |
| Poaceae | Echinochloa crus-galli | 14 | AH07.3199, AH08.2054, AH08.2056, AH09.2079, BH06.2677 ... |
| Poaceae | Eleusine coracana subsp. coracana | 9 | gene-QOZ80_2AG0143160, gene-QOZ80_2BG0198530 ... |
| Poaceae | Hordeum vulgare | 7 | HORVU.MOREX.r3.2HG0196070.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 10 | gene-QYE76_001924, gene-QYE76_018702, gene-QYE76_024733 ... |
| Poaceae | Oryza coarctata | 10 | Oco03G019660, Oco04G020440, Oco04G020450, Oco07G014100 ... |
| Poaceae | Oryza sativa | 9 | LOC_Os02g48200.1, LOC_Os02g48210.1, LOC_Os04g01874.1 ... |
| Poaceae | Paspalum vaginatum | 7 | gene-BS78_02G067900, gene-BS78_04G252600 ... |
| Poaceae | Puccinellia tenuiflora | 11 | Pt_Chr0203638, Pt_Chr0206891, Pt_Chr0301606, Pt_Chr0306592 ... |
| Poaceae | Sporobolus alterniflorus | 10 | Chr06G003820, Chr09G021870, Chr09G021880, Chr15G005270 ... |
| Poaceae | Thinopyrum elongatum | 10 | Tel2E01G769200, Tel2E01G769300, Tel2E01G772800 ... |
| Poaceae | Triticum dicoccoides | 19 | gene_TRIDC2AG065050, gene_TRIDC2AG065140 ... |
| Poaceae | Triticum aestivum | 34 | TraesCS2A02G455600.1.cds1, TraesCS2A02G456400.1.cds1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb072760_P001, Zm00001eb086180_P001 ... |
| Poaceae | Zoysia japonica | 9 | nbis-gene-17434, nbis-gene-17436, nbis-gene-22050 ... |
| Poaceae | Zoysia macrostachya | 9 | Zma_g14267, Zma_g17011, Zma_g21856, Zma_g21857, Zma_g23246 ... |
| Portulacaceae | Portulaca oleracea | 10 | evm.TU.LG02.2733, evm.TU.LG07.2071, evm.TU.LG07.269 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g11760 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.554, evm.TU.Scaffold_1_RagTag.1248 |
| Rhizophoraceae | Carallia pectinifolia | 9 | nbisL1-mrna-16923, nbisL1-mrna-17735, nbisL1-mrna-17799 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13287, nbisL1-mrna-7864 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8193 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000016l.140, evm.TU.utg000007l.52 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018443 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-13403, nbisL1-mrna-19766, nbisL1-mrna-23331 ... |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3864 |
| Salicaceae | Populus euphratica | 4 | populus_peu08389, populus_peu12312, populus_peu17291 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132607378, gene-LOC132617698, gene-LOC132621601 |
| Solanaceae | Solanum chilense | 3 | SOLCI002265000, SOLCI002698700, SOLCI002815100 |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107002271, gene-LOC107005676, gene-LOC107011477 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_16894, gene_3074 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G2449, TC12G0889 |