Basic Information
Locus ID:
Ag3G01575
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
2-oxoisovalerate dehydrogenase subunit alpha
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 103254763 | 103263582 | - | Ag3G01575 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 49,352.44 Da | 42.19 | 75.36 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02000 | TPP_E1_PDC_ADC_BCADC | 96 | 388 | 1.81375E-151 | - |
| Pfam | PF00676 | Dehydrogenase E1 component | 99 | 392 | 3.3E-100 | IPR001017 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 76 | 430 | 8.6E-113 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 37 | 433 | 2.0E-148 | - |
Gene Ontology
KEGG Pathway
Pathway:
ko00280 (Valine, leucine and isoleucine degradation)
map00280 (Valine, leucine and isoleucine degradation)
ko00640 (Propanoate metabolism)
map00640 (Propanoate metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
Reaction:
R07599 (3-Methyl-2-oxobutanoic acid + Thiamin diphosphate <=> 2-Methyl-1-hydroxypropyl-ThPP + CO2)
R07600 (2-Methyl-1-hydroxypropyl-ThPP + Enzyme N6-(lipoyl)lysine <=> [Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase] S-(2-methylpropanoyl)dihydrolipoyllysine + Thiamin diphosphate)
R07601 (4-Methyl-2-oxopentanoate + Thiamin diphosphate <=> 3-Methyl-1-hydroxybutyl-ThPP + CO2)
R07602 (3-Methyl-1-hydroxybutyl-ThPP + Enzyme N6-(lipoyl)lysine <=> [Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase] S-(3-methylbutanoyl)dihydrolipoyllysine + Thiamin diphosphate)
R07603 ((S)-3-Methyl-2-oxopentanoic acid + Thiamin diphosphate <=> 2-Methyl-1-hydroxybutyl-ThPP + CO2)
R07604 (2-Methyl-1-hydroxybutyl-ThPP + Enzyme N6-(lipoyl)lysine <=> [Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase] S-(2-methylbutanoyl)dihydrolipoyllysine + Thiamin diphosphate)
R10996 (2-Oxobutanoate + Thiamin diphosphate <=> 2-(alpha-Hydroxypropyl)thiamine diphosphate + CO2)
R10997 (2-(alpha-Hydroxypropyl)thiamine diphosphate + Enzyme N6-(lipoyl)lysine <=> Enzyme N6-(S-propyldihydrolipoyl)lysine + Thiamin diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21400.3 | - | 0 |
| RefSeq | XP_017247659.1 | PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial-like [Daucus carota subsp. sativus] | 0 |
| Q9LPL5 | 2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g21400 PE=2 SV=1 | 0 | |
| TrEMBL | A0A165XTZ6 | E1_dh domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014113 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 42.891415 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.733951 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.287308 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.779496 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.785081 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.841694 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.535955 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.782527 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.24472 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 10.108181 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 8.378321 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 6.832143 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.504637 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.641575 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.830699 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.491449 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.276643 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.156958 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.605886 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.144172 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.823337 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.247326 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.181335 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.319291 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.507071 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 28.28594 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.43441 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.025459 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.098314 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.050558 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.094504 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.657949 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.011525 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.079577 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.979136 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.377344 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.241941 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.172937 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.457073 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.571242 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.118538 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.62639 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 11.046013 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.69752 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.650219 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12031, jg39670 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_1049, gene_1050, gene_25247, gene_25248 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah024221, Ah027113 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g010630, BVRB_6g132750 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg13443, Sbi_jg28271, Sbi_jg51336, Sbi_jg52424 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg7185, Seu_jg9426 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00013427, GOSA_00020145 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl10450, Sgl15705, Sgl33760 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000000394, gene:ENSEOMG00000002528 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0013520, CQ.Regalona.r1.1BG0012640 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30038720, pistato.v30201350 |
| Apiaceae | Apium graveolens | 2 | Ag3G01575, Ag7G02190 |
| Arecaceae | Cocos nucifera | 1 | scaffold011718G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720523 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.250.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri11G29069, Ftri12G03333, Ftri12G16755, Ftri16G12838 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G21400.1, AT5G09300.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007543m.g.v1.0, Thhalv10013452m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g18950.v2.2, Sp6g34020.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g009170.2N, BniB04g036010.2N, BniB08g004020.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq03G1899, Ceq06G1714, Ceq06G1909 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G2046, Cgl06G1776, Cgl06G2004 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g08810 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0451s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g13100, gene.Thate06g09680 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12281 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.889, evm.TU.LG06.795 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00014211, Pov_00023064 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G00385, Lb1G07224, Lb7G34802 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.366, BH05.423, CH05.485 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0384000, gene-QOZ80_5BG0430850 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0453670.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_018697, gene-QYE76_018698, gene-QYE76_071976 |
| Poaceae | Oryza coarctata | 1 | Oco24G002740 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g08260.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G054000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703355 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G023530, Chr06G025360, Chr27G002860 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G217500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4BG011010, gene_TRIDC5AG018220 |
| Poaceae | Triticum aestivum | 4 | TraesCS4B02G071500.1, TraesCS5A02G120000.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb409040_P006 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25493, nbis-gene-46230 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g24847, Zma_g25581 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG03.2426, evm.TU.LG04.1525, evm.TU.LG10.1430 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc05g11060, gene.Posoc05g11070, gene.Posoc05g11100 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.862, evm.TU.Scaffold_7_RagTag.1168 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-1052, nbisL1-mrna-18671, nbisL1-mrna-968 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11642, nbisL1-mrna-14612 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13154, nbisL1-mrna-6528 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.392, evm.TU.utg000019l.677 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00011674, Maker00012748 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-5142, nbisL1-mrna-8908 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18381, nbisL1-mrna-19690 |
| Salicaceae | Populus euphratica | 5 | populus_peu13663, populus_peu14810, populus_peu14815 ... |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132602416, gene-LOC132612561, gene-LOC132627204 ... |
| Solanaceae | Solanum chilense | 5 | SOLCI000220100, SOLCI002586800, SOLCI004458100 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107018340, gene-LOC107020571, gene-LOC107021536 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_11070, gene_879 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2752, TC04G0380 |