Basic Information
Locus ID:
Ag3G01572
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 102927473 | 102930605 | + | Ag3G01572 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 95,375.90 Da | 36.60 | 81.36 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00028 | B_lectin | 38 | 149 | 1.56645E-17 | IPR001480 |
| CDD | cd14066 | STKc_IRAK | 517 | 800 | 9.28303E-96 | - |
| Pfam | PF01453 | D-mannose binding lectin | 78 | 160 | 2.0E-14 | IPR001480 |
| Pfam | PF00069 | Protein kinase domain | 515 | 721 | 2.5E-50 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 487 | 799 | 2.43E-77 | IPR011009 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 67 | 200 | 2.22E-16 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 587 | 803 | 9.4E-59 | - |
| Gene3D | G3DSA:2.90.10.30 | - | 40 | 158 | 2.8E-11 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 476 | 586 | 1.3E-32 | - |
| SMART | SM00220 | serkin_6 | 511 | 798 | 2.9E-32 | IPR000719 |
| SMART | SM00108 | blect_4 | 36 | 149 | 4.7E-14 | IPR001480 |
| PIRSF | PIRSF000641 | SRK | 1 | 862 | 5.2E-197 | IPR024171 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 29 | 147 | 11.801298 | IPR001480 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 511 | 809 | 36.880566 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 630 | 642 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 517 | 540 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 829 | 852 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 712 | 732 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35370.1 | S-locus lectin protein kinase family protein. | 0 |
| RefSeq | XP_017246727.1 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 [Daucus carota subsp. sativus] | 0 |
| O65238 | G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 OS=Arabidopsis thaliana OX=3702 GN=At5g35370 PE=2 SV=2 | 0 | |
| TrEMBL | A0A165XU29 | Receptor-like serine/threonine-protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014110 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.8813 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.638128 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.874336 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.906396 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.700856 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.681621 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.925456 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.352197 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.154215 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.492001 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.116096 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.344808 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.207632 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.186375 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.07806 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.048749 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.080771 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.09483 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.489579 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.543446 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.051246 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.152312 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.048041 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.149359 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.177336 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.023034 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.06996 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.099124 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.055301 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.151497 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.270337 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.029807 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.535188 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.491669 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.032578 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.301726 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.736714 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.355395 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.218901 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.343707 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.405384 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg10429, jg19505, jg39711, jg39712 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23387 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022578 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g000170 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000033178 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30040050, pistato.v30064380 |
| Apiaceae | Apium graveolens | 1 | Ag3G01572 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G007860, COCNU_13G004360 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103712545, gene-LOC103720305 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1953.V1.1, AsparagusV1_08.2356.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G07834, Ftri5G33074 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G35370.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027637m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g08290.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g018390.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2024 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g09160 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g18630 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.939 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00014136, Pov_00021644, Pov_00021646, Pov_00021698 |
| Poaceae | Echinochloa crus-galli | 7 | AH05.1319, AH07.3608, BH03.2250, BH05.1490, BH07.3416 ... |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_2AG0147000, gene-QOZ80_2BG0202530 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.5HG0419600.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 7 | gene-QYE76_000267, gene-QYE76_000269, gene-QYE76_000426 ... |
| Poaceae | Oryza coarctata | 6 | Oco03G022680, Oco04G023330, Oco14G003090, Oco17G006430 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g52850.1, LOC_Os09g28180.1, LOC_Os12g44320.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G203000, gene-BS78_04G287800 ... |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0203072, Pt_Chr0207065, Pt_Chr0601305, Pt_Chr0601332 ... |
| Poaceae | Sporobolus alterniflorus | 8 | Chr06G001380, Chr09G019030, Chr0G028390, Chr0G028640 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel5E01G004700, Tel5E01G383600, Tel6E01G584600 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC5AG000540, gene_TRIDC5AG037600 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS5A02G237700.1.cds1, TraesCS5B02G000800.1.cds1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb033220_P001, Zm00001eb256010_P001 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-19687, nbis-gene-21712, nbis-gene-47398 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g14506, Zma_g17224, Zma_g26219, Zma_g32659 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g21980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1083 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18759, nbisL1-mrna-9580 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5594 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13077 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.172 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20007 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9857 |
| Salicaceae | Populus euphratica | 2 | populus_peu19720, populus_peu32380 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132613436, gene-LOC132627029 |
| Solanaceae | Solanum chilense | 1 | SOLCI003830100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107016286, gene-LOC114074957 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_15065, gene_15066 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2488 |
| Zosteraceae | Zostera marina | 3 | Zosma01g15000.v3.1, Zosma01g19570.v3.1, Zosma02g18110.v3.1 |