Basic Information
Locus ID:
Ag3G01544
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Domain of unknown function (DUF543)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 98348710 | 98356637 | + | Ag3G01544 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 8,527.59 Da | 52.10 | 75.44 | -0.05 |
Protein Domain:
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72170.1 | Domain of unknown function (DUF543). | 0 |
| RefSeq | XP_017244626.1 | PREDICTED: uncharacterized protein LOC108216382 [Daucus carota subsp. sativus] | 0 |
| Q8LAJ9 | MICOS complex subunit MIC10 OS=Arabidopsis thaliana OX=3702 GN=MIC10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165XUX3 | MICOS complex subunit MIC10 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014081 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 122.504448 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 99.501152 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 98.763397 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 96.897095 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 97.347145 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 78.921364 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 67.973564 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 50.526463 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 170.097824 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 178.916687 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 180.380051 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 200.155136 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 202.678131 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 209.469543 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 151.423187 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 166.467072 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 206.752594 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 130.093262 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 130.572174 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 156.433762 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 146.498978 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 233.552963 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 239.189194 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 224.071365 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 187.330627 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 139.524994 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 164.306152 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 145.951553 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 153.247986 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 123.347069 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 119.932785 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 141.089508 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 84.43911 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 234.384995 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 83.449913 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 203.449936 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 181.632339 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 190.978012 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 112.856529 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 94.36908 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 96.697746 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 134.194855 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 111.21669 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 178.137161 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 152.125336 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 192.168747 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 147.879105 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 280.329254 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 290.882233 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 293.633667 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12243 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23466 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah007430, Ah017879, Ah022723 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g001810 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg3756, Sbi_jg49010 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6229 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000713 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10760, Sgl16116 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014208, gene:ENSEOMG00000033533 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0001290, CQ.Regalona.r1.2BG0027370 |
| Apiaceae | Apium graveolens | 1 | Ag3G01544 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G021080, COCNU_11G004420 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103716606, gene-LOC103717165, gene-LOC120105398 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.15.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G24637, Ftri16G33124, Ftri9G32134 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G22520.2, AT1G72170.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009192m.g.v1.0, Thhalv10019513m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g20030.v2.2, Sp5g27250.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g019770.2N, BniB03g030320.2N, BniB03g050330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2531 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2754 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g01180, gene.Cymno05g01220 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0175s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 7 | gene.Thate01g14250, gene.Thate03g11060, gene.Thate05g16090 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1838 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1352 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00005779, Pov_00021914 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G26981, Lb5G29440 |
| Poaceae | Echinochloa crus-galli | 5 | AH01.2143, AH01.529, BH01.202, BH05.3922, CH01.44 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0208840, gene-QOZ80_3BG0253960 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0304940.1, HORVU.MOREX.r3.5HG0531680.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_059593, gene-QYE76_060259 |
| Poaceae | Oryza coarctata | 2 | Oco05G028530, Oco06G029570 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g62420.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G016000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0106280, Pt_Chr0702892 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G000720, Chr04G032420, Chr07G031470, Chr12G032190 |
| Poaceae | Thinopyrum elongatum | 11 | Tel1E01G710300, Tel1E01G737500, Tel2E01G573200 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G347700.1, TraesCS5B02G525500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb063990_P001, Zm00001eb211000_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15620, nbis-gene-16712 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2401, Zma_g82 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.2055, evm.TU.LG06.272, evm.TU.LG19.1367 |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc01g02740, gene.Posoc02g25310, gene.Posoc04g17440 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.663 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18768 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1845 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13071 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.462, evm.TU.utg000018l.570 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003248, Maker00011929 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2941, nbisL1-mrna-8159 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20379, nbisL1-mrna-9866 |
| Salicaceae | Populus euphratica | 2 | populus_peu16577, populus_peu18968 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626896 |
| Solanaceae | Solanum chilense | 1 | SOLCI003455500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002923 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_15815, gene_678 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2417 |
| Zosteraceae | Zostera marina | 2 | Zosma01g41750.v3.1, Zosma02g24730.v3.1 |