Basic Information
Locus ID:
Ag3G01527
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 95079796 | 95084218 | - | Ag3G01527 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.25 | 25,632.40 Da | 29.90 | 112.67 | 0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G33490.1 | 0 | |
| RefSeq | XP_017244286.1 | PREDICTED: uncharacterized protein LOC108216117 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A165XVK5 | DUF2062 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014061 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.019734 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.666006 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.918256 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.688618 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.784142 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.980681 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.106413 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.470156 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 2.642311 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 2.683666 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 1.971226 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 2.425062 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 2.55995 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.58514 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 19.194118 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 21.466412 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 17.353706 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 21.088608 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.797471 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 11.516593 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.650803 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 17.343225 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.232979 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.880393 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 17.141424 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.443966 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 16.487043 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.173885 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 20.352921 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.456755 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.882061 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.384187 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.620551 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.559618 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.708805 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.712442 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.776143 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.424342 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.126111 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.560819 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.764948 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 11.384895 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 15.180646 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 10.637876 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 13.396667 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 12.959003 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 14.599636 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 11.362167 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.97057 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.267741 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12297 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23299 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah024021 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g009810 |
| Amaranthaceae | Salicornia bigelovii | 10 | Sbi_jg28460, Sbi_jg28467, Sbi_jg28472, Sbi_jg28476 ... |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7050 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022068 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl11723, Sgl11882, Sgl17211 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016068, gene:ENSEOMG00000034078 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0012480 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30033100 |
| Apiaceae | Apium graveolens | 2 | Ag3G01527, Ag7G00487 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G021310, scaffold135149G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704795 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.382.V1.1, AsparagusV1_09.326.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G05429, Ftri2G28923, FtriNA17452 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G33490.1, AT4G10140.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008879m.g.v1.0, Thhalv10029009m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g07270.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g050630.2N, BniB05g058710.2N, BniB08g052570.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1647 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1704 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g01640 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g25340 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1261 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037546 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03764 |
| Poaceae | Echinochloa crus-galli | 2 | AH05.680, CH05.836 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0408640, gene-QOZ80_5BG0457040 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0094030.2 |
| Poaceae | Oryza coarctata | 2 | Oco09G000280, Oco10G000350 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g01510.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G003400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0505836 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G014080, Chr12G022780, Chr18G003070, Chr22G016950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G731500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG063610, gene_TRIDC1BG072840 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G433300.1, TraesCS1B02G469200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb207120_P001, Zm00001eb289060_P005 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27531 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g03080 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1381 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-20114, nbisL1-mrna-20185 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13523 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13331 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.263 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011882 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9039 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18576 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606192, gene-LOC132644779 |
| Solanaceae | Solanum chilense | 2 | SOLCI004207700, SOLCI004407900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003085, gene-LOC107021068 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15221_chr06_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2159 |
| Zosteraceae | Zostera marina | 2 | Zosma02g24810.v3.1, Zosma03g36570.v3.1 |