Basic Information
Locus ID:
Ag3G01506
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 93479044 | 93481594 | - | Ag3G01506 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.99 | 31,232.78 Da | 55.80 | 70.64 | -0.55 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35930.1 | F-box family protein. | 0 |
| RefSeq | XP_017245086.1 | PREDICTED: F-box protein At4g35930-like [Daucus carota subsp. sativus] | 0 |
| Q5XF11 | F-box protein At4g35930 OS=Arabidopsis thaliana OX=3702 GN=At4g35930 PE=2 SV=1 | 0 | |
| TrEMBL | A0A165XWG0 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014039 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.716846 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.488308 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.231275 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.681972 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.908361 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 16.168066 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.973688 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.497334 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.106983 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.769053 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.886183 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 13.749006 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.193629 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.160857 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.425269 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.641177 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.01395 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.905193 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.174104 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.616361 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.18229 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.476358 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.274 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.277608 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.298657 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.284153 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.803402 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.034276 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.225138 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.619319 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.444429 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.31157 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.305761 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.532392 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.625158 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.462467 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.336546 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.38115 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.244486 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.317368 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 28.421156 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.187894 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.315226 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.254676 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 27.579805 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.588529 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.958112 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.574206 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 11.723247 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17230 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16850 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026818 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g130140 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13763, Sbi_jg52153 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9688 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017508 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33293, Sgl38575, Sgl38682 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000543, gene:ENSEOMG00000002845 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0019700, CQ.Regalona.r1.6BG0020820 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30210660, pistato.v30211270 |
| Apiaceae | Apium graveolens | 1 | Ag3G01506 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G002640, COCNU_10G001830 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103719598, gene-LOC103721140 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.2659.V1.1, AsparagusV1_10.183.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri17G25813, Ftri1G29579, Ftri6G30246 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G35930.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025800m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g33710.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g087760.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0129 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0142 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g19080 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10453 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2803 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020387 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G06133, Lb1G06141 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1944, BH01.2295, CH01.2395 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0125530, gene-QOZ80_2BG0181200 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0038080.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_018727 |
| Poaceae | Oryza coarctata | 2 | Oco19G004840, Oco20G004730 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g30280.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G226000 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr13G015320 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G253900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG020050, gene_TRIDC1BG025380 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G136000.2, TraesCS1B02G156200.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb047460_P004, Zm00001eb222730_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-21330, nbis-gene-48035 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13292, Zma_g16091 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.320, evm.TU.LG25.992 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g09200 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.76, evm.TU.Scaffold_6_RagTag.2133 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-16998, nbisL1-mrna-214, nbisL1-mrna-75 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13370, nbisL1-mrna-14334 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11692, nbisL1-mrna-5876 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1306, evm.TU.utg000019l.1169 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006770, Maker00007415 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15679, nbisL1-mrna-6577 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-2446, nbisL1-mrna-2981 |
| Salicaceae | Populus euphratica | 1 | populus_peu14100 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132618643, gene-LOC132623116 |
| Solanaceae | Solanum chilense | 1 | SOLCI006378500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012485 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3506 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0752 |
| Zosteraceae | Zostera marina | 1 | Zosma06g18210.v3.1 |