Basic Information
Locus ID:
Ag3G01494
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Chaperone protein DNAj
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 91054230 | 91057380 | + | Ag3G01494 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 31,771.35 Da | 41.44 | 60.46 | -0.96 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06257 | DnaJ | 31 | 83 | 2.8767E-22 | IPR001623 |
| Pfam | PF00226 | DnaJ domain | 30 | 91 | 3.2E-25 | IPR001623 |
| SUPERFAMILY | SSF46565 | Chaperone J-domain | 25 | 99 | 1.16E-25 | IPR036869 |
| Gene3D | G3DSA:1.10.287.110 | DnaJ domain | 14 | 113 | 8.5E-28 | IPR036869 |
| SMART | SM00271 | dnaj_3 | 28 | 86 | 2.6E-26 | IPR001623 |
| ProSiteProfiles | PS50076 | dnaJ domain profile. | 29 | 94 | 21.361437 | IPR001623 |
| PRINTS | PR00625 | DnaJ domain signature | 66 | 86 | 1.1E-19 | IPR001623 |
| PRINTS | PR00625 | DnaJ domain signature | 31 | 49 | 1.1E-19 | IPR001623 |
| PRINTS | PR00625 | DnaJ domain signature | 49 | 64 | 1.1E-19 | IPR001623 |
| PRINTS | PR00625 | DnaJ domain signature | 86 | 105 | 1.1E-19 | IPR001623 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 270 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06910.1 | J-domain protein 6. DnaJ homologue, contains J domain which is common in all known DnaJ proteins but missing G/F domain. | 0 |
| RefSeq | XP_017246815.1 | PREDICTED: chaperone protein dnaJ 6-like isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q9FL54 | Chaperone protein dnaJ 6 OS=Arabidopsis thaliana OX=3702 GN=ATJ6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164XZ44 | J domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017002 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.361853 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.217933 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.006883 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.637465 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.109374 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.812199 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.03928 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.988984 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 56.459774 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 62.236919 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 65.002304 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 57.724304 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 42.192177 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 45.509712 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.253232 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.590925 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 19.204559 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.487927 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.997464 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.283655 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.695734 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 52.23317 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 57.97456 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 59.092018 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 40.27507 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 25.928947 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 17.816368 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 21.545328 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 24.764515 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.036955 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.529905 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.345395 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.360307 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 28.298483 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.053389 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.487914 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.979241 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.25507 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 20.900642 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.372911 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.570259 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.415462 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 14.129107 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 16.093472 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 21.032467 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.605012 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 20.144838 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 50.638439 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 64.810738 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 60.18066 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg31310, jg33270, jg33271, jg4369 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4683 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021697 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g061010 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59256, Sbi_jg63376 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23516 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018419 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl23764 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014064, gene:ENSEOMG00000031758 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0020390, CQ.Regalona.r1.3BG0021270 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30187080 |
| Apiaceae | Apium graveolens | 2 | Ag2G01497, Ag3G01494 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G012110 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720332, gene-LOC103723827 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3323.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G13581 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G12170.1, AT5G06910.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014343m.g.v1.0, Thhalv10021344m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g10410.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g052720.2N, BniB03g069000.2N, BniB07g056500.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1107 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1276 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g01500 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0128s00019.v1.0, Dusal.0128s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g07360 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-8462, nbisL1-mrna-8466 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2443 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00006617, Pov_00017495, Pov_00025836 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G16270, Lb3G16271 |
| Poaceae | Echinochloa crus-galli | 5 | AH07.710, BH07.840, CH01.1510, CH07.3, CH07.598 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0104990, gene-QOZ80_2BG0158420 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0573240.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021311 |
| Poaceae | Oryza coarctata | 2 | Oco03G004980, Oco04G004940 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g10220.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G073800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0202138, Pt_Chr0202181 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G033190, Chr15G024580 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G332400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG022360, gene_TRIDC6BG029000 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G158600.1, TraesCS6B02G192700.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb139200_P001, Zm00001eb205970_P003 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-33482, nbis-gene-44081 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12379, Zma_g15129 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.522, evm.TU.LG15.423 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g03300 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1206, evm.TU.Scaffold_2_RagTag.1143 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3783, nbisL1-mrna-6416 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16267 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18857, nbisL1-mrna-4225 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.546 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005979 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10967, nbisL1-mrna-12450 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13397, nbisL1-mrna-5590 |
| Salicaceae | Populus euphratica | 2 | populus_peu11000, populus_peu26135 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607500, gene-LOC132633961 |
| Solanaceae | Solanum chilense | 1 | SOLCI003450000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002724 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.6955_chr04_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2415 |
| Zosteraceae | Zostera marina | 7 | Zosma01g41610.v3.1, Zosma01g41650.v3.1, Zosma03g12370.v3.1 ... |