halophFGD

Basic Information

Locus ID: Ag3G01472

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Legume lectin domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	88958092	88960375	-	Ag3G01472

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.54	75,087.53 Da	40.81	90.83	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd06899	lectin_legume_LecRK_Arcelin_ConA	29	274	9.89888E-78	IPR001220
CDD	cd14066	STKc_IRAK	352	621	6.03718E-90	-
Pfam	PF00139	Legume lectin domain	29	278	1.4E-65	IPR001220
Pfam	PF00069	Protein kinase domain	348	617	7.8E-50	IPR000719
SUPERFAMILY	SSF49899	Concanavalin A-like lectins/glucanases	26	287	5.13E-58	IPR013320
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	327	619	4.86E-80	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	420	634	2.8E-55	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	306	419	3.7E-34	-
Gene3D	G3DSA:2.60.120.200	-	26	282	7.2E-65	-
SMART	SM00220	serkin_6	346	624	3.7E-41	IPR000719
ProSiteProfiles	PS51257	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	21	6.0	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	346	635	38.816925	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	352	373	-	IPR017441
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	467	479	-	IPR008271
ProSitePatterns	PS00307	Legume lectins beta-chain signature.	154	160	-	IPR019825
ProSitePatterns	PS00308	Legume lectins alpha-chain signature.	245	254	-	IPR000985

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding) GO:0030246 (carbohydrate binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G06740.1	Concanavalin A-like lectin protein kinase family protein.
RefSeq	XP_017246191.1	PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Daucus carota subsp. sativus]
Swiss-Prot	Q9FG33	Probable L-type lectin-domain containing receptor kinase S.5 OS=Arabidopsis thaliana OX=3702 GN=LECRKS5 PE=2 SV=1
TrEMBL	A0A165YI76	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013541 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.056714	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.175585	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.900427	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.424345	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.471083	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	2.841112	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.678529	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.314705	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.061136	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.076136	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.08385	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.029421	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.563304	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.024067	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.025162	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.722256	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.129772	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	12.0971	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	17.896788	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.04307	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.735543		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	8.321589		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	6.078975		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	12.697356		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	5.543453		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.171951		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.049571		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.143523	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.837297	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	51.407829	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	7.58578	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	3.553469	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.497582	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	31.164116	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	1.541461	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.046896	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg19944, jg20153, jg30962, jg30963, jg30965
Aizoaceae	Mesembryanthemum crystallinum	2	gene_19106, gene_8236
Amaranthaceae	Atriplex hortensis	5	Ah021472, Ah021473, Ah021474, Ah021482, Ah026809
Amaranthaceae	Beta vulgaris	1	BVRB_6g139600
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg13770, Sbi_jg52144
Amaranthaceae	Salicornia europaea	1	Seu_jg9693
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00017505
Amaranthaceae	Suaeda glauca	9	Sgl02594, Sgl02595, Sgl07753, Sgl07754, Sgl33298, Sgl38524 ... Sgl38564, Sgl74093, Sgl77574
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000001919, gene:ENSEOMG00000002512 ... gene:ENSEOMG00000027326, gene:ENSEOMG00000031207, gene:ENSEOMG00000031334
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.3AG0019500, CQ.Regalona.r1.3AG0019510 ... CQ.Regalona.r1.3AG0019520, CQ.Regalona.r1.3BG0020260, CQ.Regalona.r1.3BG0020270, CQ.Regalona.r1.6AG0019640, CQ.Regalona.r1.6BG0020730
Anacardiaceae	Pistacia vera	2	pistato.v30105570, pistato.v30212580
Apiaceae	Apium graveolens	2	Ag3G01472, Ag3G01591
Arecaceae	Cocos nucifera	2	COCNU_08G004260, COCNU_08G004270
Arecaceae	Phoenix dactylifera	6	gene-LOC103713890, gene-LOC103713892, gene-LOC120103905 ... gene-LOC120108462, gene-LOC120112347, gene-LOC120112348
Asteraceae	Flaveria trinervia	1	Ftri13G22690
Brassicaceae	Arabidopsis thaliana	1	AT5G06740.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10012919m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp6g36110.v2.2
Brassicaceae	Brassica nigra	1	BniB02g054040.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq04G0236, Ceq04G0760, Ceq04G1173, Ceq06G0006, Ceq07G1913
Casuarinaceae	Casuarina glauca	5	Cgl04G0329, Cgl04G0871, Cgl04G1332, Cgl06G0008, Cgl07G2084
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno06g08200
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate01g31350, gene.Thate01g31370, gene.Thate05g06560 ... gene.Thate06g23910, gene.Thate06g23930
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-11049, nbisL1-mrna-8491
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.2914, evm.TU.LG08.471
Plantaginaceae	Plantago ovata	1	Pov_00020290
Plumbaginaceae	Limonium bicolor	3	Lb1G06086, Lb1G06090, Lb1G06091
Poaceae	Echinochloa crus-galli	14	AH07.3199, AH08.2054, AH08.2056, AH09.2079, BH06.2677 ... BH07.3031, BH08.2162, BH08.2165, BH09.467, CH07.3106, CH08.2335, CH08.2336, CH09.2381, CH09.511
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_2AG0143160, gene-QOZ80_2BG0198530 ... gene-QOZ80_4AG0306190, gene-QOZ80_4BG0337160, gene-QOZ80_4BG0337170, gene-QOZ80_8AG0637060, gene-QOZ80_8AG0637070, gene-QOZ80_8BG0665590, gene-QOZ80_8BG0665600
Poaceae	Hordeum vulgare	7	HORVU.MOREX.r3.2HG0196070.1.CDS1 ... HORVU.MOREX.r3.2HG0196170.1.CDS1, HORVU.MOREX.r3.3HG0313630.1.CDS1, HORVU.MOREX.r3.5HG0485570.1.CDS1, HORVU.MOREX.r3.6HG0608990.1, HORVU.MOREX.r3.7HG0680850.1, HORVU.MOREX.r3.7HG0680870.1
Poaceae	Lolium multiflorum	10	gene-QYE76_001924, gene-QYE76_018702, gene-QYE76_024733 ... gene-QYE76_024760, gene-QYE76_030021, gene-QYE76_030023, gene-QYE76_044214, gene-QYE76_045818, gene-QYE76_045898, gene-QYE76_045905
Poaceae	Oryza coarctata	10	Oco03G019660, Oco04G020440, Oco04G020450, Oco07G014100 ... Oco08G000290, Oco08G013610, Oco11G008430, Oco12G008450, Oco15G010960, Oco15G010970
Poaceae	Oryza sativa	9	LOC_Os02g48200.1, LOC_Os02g48210.1, LOC_Os04g01874.1 ... LOC_Os04g01890.1, LOC_Os04g49460.1, LOC_Os04g49480.1, LOC_Os06g22290.1, LOC_Os08g40270.1, LOC_Os08g40280.1
Poaceae	Paspalum vaginatum	7	gene-BS78_02G067900, gene-BS78_04G252600 ... gene-BS78_06G200000, gene-BS78_06G200100, gene-BS78_06G200200, gene-BS78_07G188300, gene-BS78_07G188400
Poaceae	Puccinellia tenuiflora	11	Pt_Chr0203638, Pt_Chr0206891, Pt_Chr0301606, Pt_Chr0306592 ... Pt_Chr0306594, Pt_Chr0306602, Pt_Chr0403763, Pt_Chr0403766, Pt_Chr0403789, Pt_Chr0403790, Pt_Chr0605362
Poaceae	Sporobolus alterniflorus	10	Chr06G003820, Chr09G021870, Chr09G021880, Chr15G005270 ... Chr16G017200, Chr17G016570, Chr20G001930, Chr25G004620, Chr29G002270, Chr30G004470
Poaceae	Thinopyrum elongatum	10	Tel2E01G769200, Tel2E01G769300, Tel2E01G772800 ... Tel2E01G773700, Tel3E01G295000, Tel3E01G716800, Tel5E01G411600, Tel6E01G508400, Tel7E01G439000, Tel7E01G439100
Poaceae	Triticum dicoccoides	19	gene_TRIDC2AG065050, gene_TRIDC2AG065140 ... gene_TRIDC2BG069450, gene_TRIDC2BG069530, gene_TRIDC2BG069540, gene_TRIDC3AG003350, gene_TRIDC3AG023250, gene_TRIDC3BG004630, gene_TRIDC3BG026890, gene_TRIDC4BG005010, gene_TRIDC4BG005410, gene_TRIDC5AG040270, gene_TRIDC5BG042620, gene_TRIDC6AG042530, gene_TRIDC6BG049690, gene_TRIDC7AG032030, gene_TRIDC7AG032040, gene_TRIDC7BG022370, gene_TRIDC7BG022380
Poaceae	Triticum aestivum	34	TraesCS2A02G455600.1.cds1, TraesCS2A02G456400.1.cds1 ... TraesCS2B02G477600.1.cds1, TraesCS2B02G478500.1.cds1, TraesCS2D02G455900.1.cds1, TraesCS2D02G456700.1.cds1, TraesCS2D02G456800.1.cds1, TraesCS3A02G169600.1.cds1, TraesCS3B02G196900.1.cds1, TraesCS3B02G490000.1, TraesCS3B02G490300.1, TraesCS3D02G172200.1.cds1, TraesCS3D02G345300.1.cds1, TraesCS4A02G465800.1, TraesCS4A02G466100.1.cds1, TraesCS4A02G467300.1.cds1, TraesCS5B02G256900.1, TraesCS5D02G265800.1, TraesCS6A02G277600.1, TraesCS6B02G305600.1, TraesCS6D02G258200.1, TraesCS7A02G023600.1.cds1, TraesCS7A02G024300.1.cds1, TraesCS7A02G249200.1, TraesCS7A02G249300.1, TraesCS7A02G249400.1, TraesCS7B02G141900.1, TraesCS7B02G142000.1, TraesCS7D02G021500.1.cds1, TraesCS7D02G248100.1, TraesCS7D02G248200.1, TraesCS7D02G258500.1.cds1, TraesCSU02G179900.1, TraesCSU02G187400.1
Poaceae	Zea mays	5	Zm00001eb072760_P001, Zm00001eb086180_P001 ... Zm00001eb174500_P001, Zm00001eb199980_P001, Zm00001eb252540_P001
Poaceae	Zoysia japonica	9	nbis-gene-17434, nbis-gene-17436, nbis-gene-22050 ... nbis-gene-22669, nbis-gene-42593, nbis-gene-54489, nbis-gene-5669, nbis-gene-8933, nbis-gene-8934
Poaceae	Zoysia macrostachya	9	Zma_g14267, Zma_g17011, Zma_g21856, Zma_g21857, Zma_g23246 ... Zma_g23248, Zma_g24361, Zma_g24362, Zma_g24363
Portulacaceae	Portulaca oleracea	10	evm.TU.LG02.2733, evm.TU.LG07.2071, evm.TU.LG07.269 ... evm.TU.LG13.1082, evm.TU.LG15.1066, evm.TU.LG15.683, evm.TU.LG18.675, evm.TU.LG21.725, evm.TU.LG21.726, evm.TU.LG26.352
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g11760
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_14_RagTag.554, evm.TU.Scaffold_1_RagTag.1248
Rhizophoraceae	Carallia pectinifolia	9	nbisL1-mrna-16923, nbisL1-mrna-17735, nbisL1-mrna-17799 ... nbisL1-mrna-28427, nbisL1-mrna-6367, nbisL1-mrna-6369, nbisL1-mrna-6370, nbisL1-mrna-6374, nbisL1-mrna-7128
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-13287, nbisL1-mrna-7864
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-8193
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000016l.140, evm.TU.utg000007l.52
Rhizophoraceae	Kandelia obovata	1	Maker00018443
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-13403, nbisL1-mrna-19766, nbisL1-mrna-23331 ... nbisL1-mrna-23332
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-3864
Salicaceae	Populus euphratica	4	populus_peu08389, populus_peu12312, populus_peu17291 ... populus_peu26196
Solanaceae	Lycium barbarum	3	gene-LOC132607378, gene-LOC132617698, gene-LOC132621601
Solanaceae	Solanum chilense	3	SOLCI002265000, SOLCI002698700, SOLCI002815100
Solanaceae	Solanum pennellii	4	gene-LOC107002271, gene-LOC107005676, gene-LOC107011477 ... gene-LOC107012231
Tamaricaceae	Reaumuria soongarica	2	gene_16894, gene_3074
Tamaricaceae	Tamarix chinensis	2	TC01G2449, TC12G0889