Basic Information
Locus ID:
Ag3G01467
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 88858873 | 88862779 | - | Ag3G01467 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 83,353.23 Da | 41.61 | 70.85 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14704 | bZIP_HY5-like | 268 | 319 | 1.03562E-20 | - |
| Pfam | PF00170 | bZIP transcription factor | 267 | 325 | 2.1E-11 | IPR004827 |
| SUPERFAMILY | SSF57959 | Leucine zipper domain | 267 | 324 | 4.13E-11 | - |
| Gene3D | G3DSA:1.20.5.170 | - | 265 | 327 | 2.7E-11 | - |
| SMART | SM00338 | brlzneu | 263 | 327 | 1.1E-15 | IPR004827 |
| ProSiteProfiles | PS50217 | Basic-leucine zipper (bZIP) domain profile. | 265 | 324 | 10.438311 | IPR004827 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 683 | 703 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 379 | 399 | - | - |
| Coils | Coil | Coil | 290 | 324 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40950.1 | Basic-leucine zipper (bZIP) transcription factor family protein. bZIP17 appears to regulate transcription as part of a salt and osmotic stress response. zip17 mutants show enhanced inhibition of primary root elongation in response to NaCl. Several salt-responsive genes, such as ATHB-7 show a reduced transcriptional response to a salt treatment in zip17 mutant seedlings. myc:bZIP17 undergoes proteolytic processing in salt-treated wild type seedlings, but not in s1p-3 (subtilase) mutants and there is also evidence for S1P-mediated cleavage of bZIP17 in vitro. In addition, an mGFP:bZIP17 protein moves from the ER to the nucleus following salt treatment. | 0 |
| RefSeq | XP_017247444.1 | PREDICTED: bZIP transcription factor 17-like [Daucus carota subsp. sativus] | 0 |
| O22208 | bZIP transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=BZIP17 PE=1 SV=2 | 0 | |
| TrEMBL | A0A165YIC3 | BZIP domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 41.382671 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.790496 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.847277 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.135518 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.797264 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.477961 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 14.719922 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 12.234918 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 5.334804 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 5.759388 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 5.473326 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.618451 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.517776 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.205645 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.84012 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.871649 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.447176 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 17.478937 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.42154 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.435422 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 18.89539 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.382921 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 12.399881 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.916065 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 11.144431 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 16.303391 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.102718 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.064363 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 20.180662 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.811073 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.858259 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.676767 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 26.648472 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 24.752838 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 29.808317 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 16.871546 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.250381 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.147129 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 18.814613 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.352154 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.023549 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 8.176745 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.091676 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.503463 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 19.21097 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 9.620639 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.597439 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 4.812864 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.507698 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 7.12024 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg15797, jg15798, jg31398, jg4195 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4552 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022217 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g063410 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg58912, Sbi_jg63700 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23195 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012959 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl02313, Sgl02314, Sgl07462, Sgl07463 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014260, gene:ENSEOMG00000030033 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0023330, CQ.Regalona.r1.3BG0024060 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30075000 |
| Apiaceae | Apium graveolens | 3 | Ag10G02222, Ag1G01699, Ag3G01467 |
| Arecaceae | Cocos nucifera | 2 | COCNU_16G000730, scaffold000854G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103720588, gene-LOC103721788, gene-LOC120107222 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.1731.V1.1, AsparagusV1_Unassigned.417.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G01785, Ftri12G18395 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G40950.1, AT3G10800.1, AT3G56660.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10005827m.g.v1.0, Thhalv10016317m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g09120.v2.2, Sp4g23270.v2.2, Sp5g05900.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB01g004460.2N, BniB01g054200.2N, BniB01g054210.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0861 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0977 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g14690 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g09710, gene.Thate06g04890 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2655, evm.TU.LG09.424 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00000062, Pov_00017554 |
| Plumbaginaceae | Limonium bicolor | 6 | Lb1G01298, Lb1G07277, Lb1G07285, Lb1G07298, Lb2G09901 ... |
| Poaceae | Echinochloa crus-galli | 5 | AH03.3885, BH03.4172, BH05.2552, CH05.2648, CH07.333 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0373250, gene-QOZ80_5BG0420530 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0065020.1, HORVU.MOREX.r3.2HG0119190.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039241 |
| Poaceae | Oryza coarctata | 3 | Oco09G009570, Oco13G014160, Oco14G014990 |
| Poaceae | Oryza sativa | 2 | LOC_Os05g34050.1, LOC_Os07g44950.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G375700, gene-BS78_09G143800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304894, Pt_Chr0304922 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G020560, Chr12G017420, Chr18G009320, Chr19G001240 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G426000, Tel2E01G289600 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1BG043770, gene_TRIDC2AG017790 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G258100.1, TraesCS1B02G268500.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb110370_P002, Zm00001eb288060_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-13926, nbis-gene-231, nbis-gene-33126 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g27208, Zma_g5678, Zma_g6964 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1365, evm.TU.LG21.977 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g30480, gene.Posoc07g12630 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1597, evm.TU.Scaffold_8_RagTag.206 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10122, nbisL1-mrna-19137 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16417, nbisL1-mrna-19285 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-13526, nbisL1-mrna-13527, nbisL1-mrna-17833 ... |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.117, evm.TU.utg000018l.862 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003266, Maker00011700 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13187, nbisL1-mrna-3144 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11395, nbisL1-mrna-12283 |
| Salicaceae | Populus euphratica | 2 | populus_peu10792, populus_peu26311 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603922, gene-LOC132607579 |
| Solanaceae | Solanum chilense | 3 | SOLCI001577800, SOLCI003882000, SOLCI004197200 |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107002225, gene-LOC107013207, gene-LOC107016941 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12414 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G2010 |
| Zosteraceae | Zostera marina | 1 | Zosma01g27550.v3.1 |