halophFGD

Basic Information

Locus ID: Ag3G01452

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Inactive leucine-rich repeat receptor-like protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	86097040	86100709	+	Ag3G01452

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.02	69,523.30 Da	32.84	93.50	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13855	Leucine rich repeat	119	179	2.1E-7	IPR001611
Pfam	PF08263	Leucine rich repeat N-terminal domain	26	66	7.8E-10	IPR013210
Pfam	PF00069	Protein kinase domain	344	631	5.2E-25	IPR000719
SUPERFAMILY	SSF52058	L domain-like	28	234	3.74E-38	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	343	633	5.12E-50	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	305	419	3.8E-13	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	420	640	2.0E-41	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	171	238	6.9E-11	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	24	170	1.1E-40	IPR032675
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	95	116	7.581043	IPR001611
ProSiteProfiles	PS50011	Protein kinase domain profile.	338	638	26.901962	IPR000719
PRINTS	PR00019	Leucine-rich repeat signature	141	154	1.8E-5	-
PRINTS	PR00019	Leucine-rich repeat signature	120	133	1.8E-5	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G57830.1	Leucine-rich repeat protein kinase family protein.
RefSeq	XP_017244005.1	PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Daucus carota subsp. sativus]
Swiss-Prot	Q9ZU46	Receptor protein kinase-like protein ZAR1 OS=Arabidopsis thaliana OX=3702 GN=ZAR1 PE=1 SV=1
TrEMBL	A0A165YH35	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013567 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	2.154081	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.664896	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.571074	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.075061	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.494432	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.856581	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.402717	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.870535	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	46.054714	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	48.396439	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	49.591137	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	35.042416	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	26.17638	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	28.308567	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	2.541787	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	6.898167	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	7.716554	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	4.426431	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	7.295351	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	3.137981	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	3.145855	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	12.098975	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	13.496846	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	16.304777	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	13.264163	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	11.51221	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	8.473327	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	3.451429	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	9.215629	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.400317		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.321524		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.287721		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.180777		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	7.68398		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.437291		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.239941		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.173967		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.121273		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	12.956775	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.625378	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.104284	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.291657	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.420115	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	16.269033	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	12.950565	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	11.864992	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg15944, jg31304
Aizoaceae	Mesembryanthemum crystallinum	1	gene_19077
Amaranthaceae	Atriplex hortensis	1	Ah021676
Amaranthaceae	Beta vulgaris	1	BVRB_3g060860
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg59241, Sbi_jg63391
Amaranthaceae	Salicornia europaea	1	Seu_jg23503
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00018430, GOSA_00018431
Amaranthaceae	Suaeda glauca	1	Sgl23754
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000014768, gene:ENSEOMG00000045526
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.3AG0020310, CQ.Regalona.r1.3BG0021130
Anacardiaceae	Pistacia vera	1	pistato.v30187190
Apiaceae	Apium graveolens	1	Ag3G01452
Arecaceae	Cocos nucifera	2	COCNU_01G011960, COCNU_11G006930
Arecaceae	Phoenix dactylifera	2	gene-LOC103696643, gene-LOC103711381
Asparagaceae	Asparagus officinalis	1	AsparagusV1_05.1216.V1.1
Asteraceae	Flaveria trinervia	1	Ftri12G28952
Brassicaceae	Arabidopsis thaliana	2	AT2G42290.1, AT3G57830.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10005826m.g.v1.0, Thhalv10017834m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g24460.v2.2, Sp5g04870.v2.2
Brassicaceae	Brassica nigra	2	BniB01g003540.2N, BniB08g072590.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq04G1116
Casuarinaceae	Casuarina glauca	1	Cgl04G1285
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno01g05790
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate09g20430
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-8460
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.2426
Plantaginaceae	Plantago ovata	1	Pov_00006923
Plumbaginaceae	Limonium bicolor	1	Lb3G16282
Poaceae	Echinochloa crus-galli	2	AH08.2014, BH08.2115
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_8AG0636570, gene-QOZ80_8BG0665210
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0679600.1
Poaceae	Lolium multiflorum	1	gene-QYE76_029981
Poaceae	Oryza coarctata	2	Oco15G011360, Oco16G011220
Poaceae	Oryza sativa	1	LOC_Os08g39590.1
Poaceae	Paspalum vaginatum	1	gene-BS78_07G183900
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0100741
Poaceae	Sporobolus alterniflorus	4	Chr16G016920, Chr17G016290, Chr20G000520, Chr29G002560
Poaceae	Thinopyrum elongatum	1	Tel7E01G433100
Poaceae	Triticum dicoccoides	2	gene_TRIDC7AG031430, gene_TRIDC7BG023090
Poaceae	Triticum aestivum	3	TraesCS7A02G245400.1, TraesCS7B02G146100.1 ... TraesCS7D02G244000.1
Poaceae	Zea mays	1	Zm00001eb034900_P001
Poaceae	Zoysia japonica	2	nbis-gene-17390, nbis-gene-55097
Poaceae	Zoysia macrostachya	2	Zma_g23222, Zma_g24335
Portulacaceae	Portulaca oleracea	2	evm.TU.LG07.529, evm.TU.LG15.415
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g10640
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_1_RagTag.1215
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-6409
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-4432
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-4218
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000016l.776
Rhizophoraceae	Kandelia obovata	1	Maker00017006
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-7489
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-13407
Salicaceae	Populus euphratica	2	populus_peu11010, populus_peu26147
Solanaceae	Lycium barbarum	1	gene-LOC132634227
Solanaceae	Solanum chilense	1	SOLCI006458900
Solanaceae	Solanum pennellii	1	gene-LOC107012663
Tamaricaceae	Reaumuria soongarica	1	gene_4073
Tamaricaceae	Tamarix chinensis	1	TC06G2399
Zosteraceae	Zostera marina	1	Zosma03g07670.v3.1