Basic Information
Locus ID:
Ag3G01448
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Functions as component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 85636373 | 85644065 | + | Ag3G01448 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.00 | 42,047.11 Da | 34.84 | 77.09 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 142 | 171 | 3.9E-5 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 17 | 107 | 1.3E-4 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 11 | 374 | 5.13E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 368 | 1.1E-134 | IPR015943 |
| SMART | SM00320 | WD40_4 | 193 | 232 | 4.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 38 | 420.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 43 | 82 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 87 | 126 | 2.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 132 | 172 | 6.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 320 | 367 | 82.0 | IPR001680 |
| PIRSF | PIRSF038093 | ARPC1 | 1 | 372 | 1.1E-145 | IPR017383 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 172 | 9.739832 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 50 | 82 | 8.781968 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 50 | 82 | 10.441614 | IPR001680 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30910.1 | actin-related protein C1A. | 0 |
| RefSeq | XP_017248107.1 | PREDICTED: actin-related protein 2/3 complex subunit 1A-like [Daucus carota subsp. sativus] | 0 |
| O80856 | Actin-related protein 2/3 complex subunit 1A OS=Arabidopsis thaliana OX=3702 GN=ARPC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A165YGM5 | Actin-related protein 2/3 complex subunit OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013571 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 14.457236 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 12.665623 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.813264 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 12.534392 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.126974 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 11.380034 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.818026 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.396451 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 25.427599 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 27.116623 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 30.73522 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 25.790611 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 23.899954 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 22.774578 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.978377 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 12.792687 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 13.831089 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 13.964287 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 16.478016 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 15.566281 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 20.217737 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 18.21966 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 20.727995 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 20.896959 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 17.738817 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 17.955648 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.239689 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.866988 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 17.22654 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.094786 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.32068 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.578156 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.467424 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.142632 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.914525 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8.733097 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.028428 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 9.828147 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 13.565741 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.217493 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.765051 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 25.909317 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 20.691257 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 20.793823 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 22.933187 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 28.99666 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 23.490715 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 24.945137 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 23.292152 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 25.164503 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19267 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011578 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g210570 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11956, Sbi_jg46885 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21174 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009515 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80362, Sgl82824 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018209, gene:ENSEOMG00000039643 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0010230, CQ.Regalona.r1.9BG0012250 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30021640 |
| Apiaceae | Apium graveolens | 1 | Ag3G01448 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G011230 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706987 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1829.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G14524 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G30910.1, AT2G31300.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10017010m.g.v1.0, Thhalv10017625m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g13380.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g013290.2N, BniB06g019930.2N, BniB08g019270.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2905 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G3027 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g03520 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g07720 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2400 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004653 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G06330, Lb1G06342 |
| Poaceae | Echinochloa crus-galli | 2 | BH07.3762, CH07.3824 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0150470, gene-QOZ80_2BG0205930 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0629710.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_026596 |
| Poaceae | Oryza coarctata | 2 | Oco03G025350, Oco04G025830 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g57220.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G320200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604395 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr09G026170, Chr13G000760, Chr15G000730 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G707400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG058010, gene_TRIDC6BG067830 |
| Poaceae | Triticum aestivum | 4 | TraesCS6B02G432000.2, TraesCS6D02G377800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb191400_P003, Zm00001eb258930_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39805 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17418 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1559, evm.TU.LG15.1695 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g02640 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1577 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-20748, nbisL1-mrna-20749 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19014 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21553 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.998 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009341 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13982 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4516 |
| Salicaceae | Populus euphratica | 1 | populus_peu27129 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641436 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018592 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8596 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1889 |
| Zosteraceae | Zostera marina | 1 | Zosma01g34900.v3.1 |