halophFGD

Basic Information

Locus ID: Ag3G01427

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: galactinol--sucrose galactosyltransferase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	83456730	83534252	-	Ag3G01427

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.45	72,926.12 Da	34.96	84.27	-0.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF05691	Raffinose synthase or seed imbibition protein Sip1	368	648	2.7E-113	IPR008811
Pfam	PF05691	Raffinose synthase or seed imbibition protein Sip1	295	361	2.0E-25	IPR008811
Pfam	PF05691	Raffinose synthase or seed imbibition protein Sip1	7	259	2.8E-103	IPR008811
SUPERFAMILY	SSF51445	(Trans)glycosidases	194	421	3.12E-35	IPR017853
Gene3D	G3DSA:3.20.20.70	Aldolase class I	174	255	1.1E-6	IPR013785

Gene Ontology

Molecular Function:

GO:0003824 (catalytic activity)

KEGG Pathway

KO Term:

K06617 (raffinose synthase [EC:2.4.1.82])

Pathway:

ko00052 (Galactose metabolism) map00052 (Galactose metabolism)

Reaction:

R02411 (alpha-D-Galactosyl-(1->3)-1D-myo-inositol + Sucrose <=> myo-Inositol + Raffinose)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G57520.1	seed imbibition 2.
RefSeq	XP_017246844.1	PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Daucus carota subsp. sativus]
Swiss-Prot	Q94A08	Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=RFS2 PE=2 SV=2
TrEMBL	A0A165YG04	galactinol--sucrose galactosyltransferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013594 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	14.979121	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	17.483162	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	12.260719	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	10.841332	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	15.136918	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	22.076883	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	16.183435	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	9.683139	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.041391	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.226991	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.051686	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.135247	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.022901	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.212029	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	2.278282	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.692193	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	13.67179	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	6.468638	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	11.130403	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	17.167786	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	2.31512	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.414538	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	2.671531	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.546431	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	8.698627	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	11.948028	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	5.678583	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	9.996505	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.544827		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.196502		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.104577		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	32.152309		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	11.026143		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	28.9874		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	11.196621		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	4.677841		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	4.904306		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.822317	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.876539	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.163589	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.274152	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	3.180552	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	16.722477	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	15.101874	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.220769	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.563262	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.152556	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.34911	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.373761	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	11	jg13005, jg15918, jg20220, jg21652, jg24729, jg25953, jg4347 ... jg25954, jg25955, jg31323, jg31719
Aizoaceae	Mesembryanthemum crystallinum	4	gene_10612, gene_4662, gene_6543, gene_7097
Amaranthaceae	Atriplex hortensis	4	Ah012149, Ah014296, Ah021790, Ah028454
Amaranthaceae	Beta vulgaris	2	BVRB_4g091140, BVRB_8g193750
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg25613, Sbi_jg59305, Sbi_jg63318, Sbi_jg63320 ... Sbi_jg9415
Amaranthaceae	Salicornia europaea	2	Seu_jg19186, Seu_jg23558
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00011007, GOSA_00011796, GOSA_00018392
Amaranthaceae	Suaeda glauca	6	Sgl02689, Sgl07846, Sgl41975, Sgl46754, Sgl73986, Sgl77491
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000007574, gene:ENSEOMG00000008622 ... gene:ENSEOMG00000011588, gene:ENSEOMG00000015898, gene:ENSEOMG00000027190, gene:ENSEOMG00000028129, gene:ENSEOMG00000029810, gene:ENSEOMG00000031009, gene:ENSEOMG00000038257, gene:ENSEOMG00000041530, gene:ENSEOMG00000042735, gene:ENSEOMG00000043996, gene:ENSEOMG00000044899
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.2BG0000160, CQ.Regalona.r1.3AG0020950 ... CQ.Regalona.r1.3BG0021740, CQ.Regalona.r1.4BG0026710, CQ.Regalona.r1.8AG0022410, CQ.Regalona.r1.8BG0020040, CQ.Regalona.r1.9BG0008960
Anacardiaceae	Pistacia vera	5	pistato.v30066290, pistato.v30140310, pistato.v30151430 ... pistato.v30186800, pistato.v30261430
Apiaceae	Apium graveolens	6	Ag10G01908, Ag10G02359, Ag3G01424, Ag3G01427, Ag3G02424 ... Ag9G01665
Arecaceae	Cocos nucifera	6	COCNU_01G013120, COCNU_01G013130, COCNU_01G018610 ... COCNU_06G014630, COCNU_11G006220, scaffold016239G000090
Arecaceae	Phoenix dactylifera	6	gene-LOC103695985, gene-LOC103697917, gene-LOC103710671 ... gene-LOC103717145, gene-LOC103719535, gene-LOC103722267
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.1041.V1.1, AsparagusV1_03.3143.V1.1 ... AsparagusV1_05.2168.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G24315, Ftri16G31353, Ftri4G09690
Brassicaceae	Arabidopsis thaliana	3	AT1G55740.1, AT3G57520.1, AT5G20250.4
Brassicaceae	Eutrema salsugineum	2	Thhalv10005800m.g.v1.0, Thhalv10012821m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g05070.v2.2, Sp6g24160.v2.2
Brassicaceae	Brassica nigra	4	BniB02g042510.2N, BniB05g043160.2N, BniB07g000660.2N ... BniB08g072230.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq01G1553, Ceq01G1865, Ceq02G1432, Ceq04G1077, Ceq06G0584
Casuarinaceae	Casuarina glauca	5	Cgl01G1715, Cgl01G2032, Cgl01G2033, Cgl04G1224, Cgl06G0603
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno04g07060, gene.Cymno13g01960
Dunaliellaceae	Dunaliella salina	2	Dusal.0013s00029.v1.0, Dusal.0013s00030.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g18460
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.2477, evm.TU.LG05.2102, evm.TU.LG07.641 ... evm.TU.LG10.986
Plantaginaceae	Plantago ovata	7	Pov_00001170, Pov_00006660, Pov_00012335, Pov_00015525 ... Pov_00019672, Pov_00037986, Pov_00037994
Plumbaginaceae	Limonium bicolor	14	Lb0G37484, Lb0G37581, Lb0G37896, Lb0G38217, Lb1G03833 ... Lb2G11778, Lb2G11779, Lb2G11780, Lb2G11781, Lb2G11786, Lb2G11787, Lb2G14035, Lb5G27305, Lb5G29575
Poaceae	Echinochloa crus-galli	21	AH01.311, AH03.586, AH05.3182, AH06.1102, AH06.408, AH06.410 ... AH08.1925, AH09.1322, BH01.413, BH03.700, BH06.531, BH06.532, BH08.2016, BH09.1501, CH01.266, CH03.797, CH06.536, CH06.537, CH08.2200, CH09.1612, CH09.2111
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_3AG0211410, gene-QOZ80_3BG0256540 ... gene-QOZ80_4BG0344500, gene-QOZ80_6AG0510530, gene-QOZ80_6BG0462650, gene-QOZ80_8AG0635630, gene-QOZ80_8BG0664440
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0176000.1, HORVU.MOREX.r3.3HG0237880.1 ... HORVU.MOREX.r3.7HG0656670.2, HORVU.MOREX.r3.7HG0677770.1
Poaceae	Lolium multiflorum	6	gene-QYE76_028371, gene-QYE76_029809, gene-QYE76_029810 ... gene-QYE76_042165, gene-QYE76_044583, gene-QYE76_049048
Poaceae	Oryza coarctata	9	Oco05G026760, Oco06G027750, Oco07G008740, Oco11G003360 ... Oco12G003360, Oco13G003740, Oco14G004150, Oco15G011850, Oco16G010720
Poaceae	Oryza sativa	5	LOC_Os03g59430.2, LOC_Os04g40520.1, LOC_Os06g07600.1 ... LOC_Os07g10840.1, LOC_Os08g38710.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G040000, gene-BS78_02G101000 ... gene-BS78_06G136400, gene-BS78_07G176100, gene-BS78_10G059400
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0302342, Pt_Chr0303853, Pt_Chr0303866, Pt_Chr0307136 ... Pt_Chr0404010, Pt_Chr0405349, Pt_Chr0405384
Poaceae	Sporobolus alterniflorus	7	Chr07G030050, Chr14G002580, Chr16G016450, Chr17G015880 ... Chr21G001720, Chr25G009200, Chr30G009080
Poaceae	Thinopyrum elongatum	4	Tel2E01G589900, Tel3E01G195800, Tel6E01G517500 ... Tel7E01G424200
Poaceae	Triticum dicoccoides	8	gene_TRIDC2AG049340, gene_TRIDC2BG052090 ... gene_TRIDC3AG014110, gene_TRIDC3BG018680, gene_TRIDC7AG015830, gene_TRIDC7AG030480, gene_TRIDC7BG005200, gene_TRIDC7BG021330
Poaceae	Triticum aestivum	12	TraesCS2A02G324700.1, TraesCS2B02G357600.2 ... TraesCS2D02G338200.2, TraesCS3A02G113900.2, TraesCS3B02G133400.1, TraesCS3D02G116400.1, TraesCS7A02G134100.1, TraesCS7A02G236500.1, TraesCS7B02G035200.2, TraesCS7B02G134600.1, TraesCS7D02G133500.2, TraesCS7D02G236700.1
Poaceae	Zea mays	8	Zm00001eb033870_P001, Zm00001eb033880_P001 ... Zm00001eb061880_P002, Zm00001eb079430_P001, Zm00001eb079440_P001, Zm00001eb079460_P001, Zm00001eb281720_P002, Zm00001eb303190_P001
Poaceae	Zoysia japonica	5	nbis-gene-15434, nbis-gene-17343, nbis-gene-34827 ... nbis-gene-34829, nbis-gene-7391
Poaceae	Zoysia macrostachya	5	Zma_g21473, Zma_g220, Zma_g24302, Zma_g31434, Zma_g6177
Portulacaceae	Portulaca oleracea	8	evm.TU.LG02.663, evm.TU.LG03.1116, evm.TU.LG07.500 ... evm.TU.LG09.1828, evm.TU.LG12.613, evm.TU.LG15.438, evm.TU.LG16.1616, evm.TU.LG26.51
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g07120, gene.Posoc01g16380, gene.Posoc03g05310 ... gene.Posoc10g04390
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.1179, evm.TU.Scaffold_4_RagTag.2283 ... evm.TU.Scaffold_8_RagTag.1674
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-20073, nbisL1-mrna-6440, nbisL1-mrna-8562 ... nbisL1-mrna-8621
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-3336, nbisL1-mrna-4430, nbisL1-mrna-6613
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-15028, nbisL1-mrna-18833, nbisL1-mrna-5029
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000008l.90, evm.TU.utg000008l.1340 ... evm.TU.utg000009l.531, evm.TU.utg000018l.15
Rhizophoraceae	Kandelia obovata	3	Maker00001228, Maker00003375, Maker00006018
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-10981, nbisL1-mrna-12435, nbisL1-mrna-1842 ... nbisL1-mrna-9356
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-13377, nbisL1-mrna-22313, nbisL1-mrna-23731 ... nbisL1-mrna-5565
Salicaceae	Populus euphratica	8	populus_peu05730, populus_peu10968, populus_peu11104 ... populus_peu17109, populus_peu26111, populus_peu26560, populus_peu26561, populus_peu28757
Solanaceae	Lycium barbarum	3	gene-LOC132603137, gene-LOC132617021, gene-LOC132635303
Solanaceae	Solanum chilense	1	SOLCI000371300
Solanaceae	Solanum pennellii	3	gene-LOC107014380, gene-LOC107025889, gene-LOC107026434
Tamaricaceae	Reaumuria soongarica	3	gene_17901, gene_5154, gene_8082
Tamaricaceae	Tamarix chinensis	4	TC06G0580, TC06G2445, TC08G2555, TC10G1254
Zosteraceae	Zostera marina	2	Zosma03g29000.v3.1, Zosma06g18360.v3.1