halophFGD

Basic Information

Locus ID: Ag3G01424

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: galactinol--sucrose galactosyltransferase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	83393100	83398157	-	Ag3G01424

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.08	83,587.48 Da	34.88	85.40	-0.11

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF05691	Raffinose synthase or seed imbibition protein Sip1	7	742	0.0	IPR008811
SUPERFAMILY	SSF51445	(Trans)glycosidases	195	514	5.42E-47	IPR017853
Gene3D	G3DSA:3.20.20.70	Aldolase class I	198	492	1.9E-8	IPR013785

Gene Ontology

Molecular Function:

GO:0003824 (catalytic activity)

KEGG Pathway

KO Term:

K06617 (raffinose synthase [EC:2.4.1.82])

Pathway:

ko00052 (Galactose metabolism) map00052 (Galactose metabolism)

Reaction:

R02411 (alpha-D-Galactosyl-(1->3)-1D-myo-inositol + Sucrose <=> myo-Inositol + Raffinose)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G57520.1	seed imbibition 2.
RefSeq	XP_017246844.1	PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Daucus carota subsp. sativus]
Swiss-Prot	Q94A08	Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=RFS2 PE=2 SV=2
TrEMBL	A0A165YG04	galactinol--sucrose galactosyltransferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013594 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	5.286981	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	8.583891	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	6.948328	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	7.231695	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	10.43449	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	8.412558	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	12.243888	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	4.602133	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.015523	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.156384		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.038141	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.104801	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.008718	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	11	jg13005, jg15918, jg20220, jg21652, jg24729, jg25953, jg4347 ... jg25954, jg25955, jg31323, jg31719
Aizoaceae	Mesembryanthemum crystallinum	4	gene_10612, gene_4662, gene_6543, gene_7097
Amaranthaceae	Atriplex hortensis	4	Ah012149, Ah014296, Ah021790, Ah028454
Amaranthaceae	Beta vulgaris	2	BVRB_4g091140, BVRB_8g193750
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg25613, Sbi_jg59305, Sbi_jg63318, Sbi_jg63320 ... Sbi_jg9415
Amaranthaceae	Salicornia europaea	2	Seu_jg19186, Seu_jg23558
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00011007, GOSA_00011796, GOSA_00018392
Amaranthaceae	Suaeda glauca	6	Sgl02689, Sgl07846, Sgl41975, Sgl46754, Sgl73986, Sgl77491
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000007574, gene:ENSEOMG00000008622 ... gene:ENSEOMG00000011588, gene:ENSEOMG00000015898, gene:ENSEOMG00000027190, gene:ENSEOMG00000028129, gene:ENSEOMG00000029810, gene:ENSEOMG00000031009, gene:ENSEOMG00000038257, gene:ENSEOMG00000041530, gene:ENSEOMG00000042735, gene:ENSEOMG00000043996, gene:ENSEOMG00000044899
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.2BG0000160, CQ.Regalona.r1.3AG0020950 ... CQ.Regalona.r1.3BG0021740, CQ.Regalona.r1.4BG0026710, CQ.Regalona.r1.8AG0022410, CQ.Regalona.r1.8BG0020040, CQ.Regalona.r1.9BG0008960
Anacardiaceae	Pistacia vera	5	pistato.v30066290, pistato.v30140310, pistato.v30151430 ... pistato.v30186800, pistato.v30261430
Apiaceae	Apium graveolens	6	Ag10G01908, Ag10G02359, Ag3G01424, Ag3G01427, Ag3G02424 ... Ag9G01665
Arecaceae	Cocos nucifera	6	COCNU_01G013120, COCNU_01G013130, COCNU_01G018610 ... COCNU_06G014630, COCNU_11G006220, scaffold016239G000090
Arecaceae	Phoenix dactylifera	6	gene-LOC103695985, gene-LOC103697917, gene-LOC103710671 ... gene-LOC103717145, gene-LOC103719535, gene-LOC103722267
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.1041.V1.1, AsparagusV1_03.3143.V1.1 ... AsparagusV1_05.2168.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G24315, Ftri16G31353, Ftri4G09690
Brassicaceae	Arabidopsis thaliana	3	AT1G55740.1, AT3G57520.1, AT5G20250.4
Brassicaceae	Eutrema salsugineum	2	Thhalv10005800m.g.v1.0, Thhalv10012821m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g05070.v2.2, Sp6g24160.v2.2
Brassicaceae	Brassica nigra	4	BniB02g042510.2N, BniB05g043160.2N, BniB07g000660.2N ... BniB08g072230.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq01G1553, Ceq01G1865, Ceq02G1432, Ceq04G1077, Ceq06G0584
Casuarinaceae	Casuarina glauca	5	Cgl01G1715, Cgl01G2032, Cgl01G2033, Cgl04G1224, Cgl06G0603
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno04g07060, gene.Cymno13g01960
Dunaliellaceae	Dunaliella salina	2	Dusal.0013s00029.v1.0, Dusal.0013s00030.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g18460
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.2477, evm.TU.LG05.2102, evm.TU.LG07.641 ... evm.TU.LG10.986
Plantaginaceae	Plantago ovata	7	Pov_00001170, Pov_00006660, Pov_00012335, Pov_00015525 ... Pov_00019672, Pov_00037986, Pov_00037994
Plumbaginaceae	Limonium bicolor	14	Lb0G37484, Lb0G37581, Lb0G37896, Lb0G38217, Lb1G03833 ... Lb2G11778, Lb2G11779, Lb2G11780, Lb2G11781, Lb2G11786, Lb2G11787, Lb2G14035, Lb5G27305, Lb5G29575
Poaceae	Echinochloa crus-galli	21	AH01.311, AH03.586, AH05.3182, AH06.1102, AH06.408, AH06.410 ... AH08.1925, AH09.1322, BH01.413, BH03.700, BH06.531, BH06.532, BH08.2016, BH09.1501, CH01.266, CH03.797, CH06.536, CH06.537, CH08.2200, CH09.1612, CH09.2111
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_3AG0211410, gene-QOZ80_3BG0256540 ... gene-QOZ80_4BG0344500, gene-QOZ80_6AG0510530, gene-QOZ80_6BG0462650, gene-QOZ80_8AG0635630, gene-QOZ80_8BG0664440
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0176000.1, HORVU.MOREX.r3.3HG0237880.1 ... HORVU.MOREX.r3.7HG0656670.2, HORVU.MOREX.r3.7HG0677770.1
Poaceae	Lolium multiflorum	6	gene-QYE76_028371, gene-QYE76_029809, gene-QYE76_029810 ... gene-QYE76_042165, gene-QYE76_044583, gene-QYE76_049048
Poaceae	Oryza coarctata	9	Oco05G026760, Oco06G027750, Oco07G008740, Oco11G003360 ... Oco12G003360, Oco13G003740, Oco14G004150, Oco15G011850, Oco16G010720
Poaceae	Oryza sativa	5	LOC_Os03g59430.2, LOC_Os04g40520.1, LOC_Os06g07600.1 ... LOC_Os07g10840.1, LOC_Os08g38710.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G040000, gene-BS78_02G101000 ... gene-BS78_06G136400, gene-BS78_07G176100, gene-BS78_10G059400
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0302342, Pt_Chr0303853, Pt_Chr0303866, Pt_Chr0307136 ... Pt_Chr0404010, Pt_Chr0405349, Pt_Chr0405384
Poaceae	Sporobolus alterniflorus	7	Chr07G030050, Chr14G002580, Chr16G016450, Chr17G015880 ... Chr21G001720, Chr25G009200, Chr30G009080
Poaceae	Thinopyrum elongatum	4	Tel2E01G589900, Tel3E01G195800, Tel6E01G517500 ... Tel7E01G424200
Poaceae	Triticum dicoccoides	8	gene_TRIDC2AG049340, gene_TRIDC2BG052090 ... gene_TRIDC3AG014110, gene_TRIDC3BG018680, gene_TRIDC7AG015830, gene_TRIDC7AG030480, gene_TRIDC7BG005200, gene_TRIDC7BG021330
Poaceae	Triticum aestivum	12	TraesCS2A02G324700.1, TraesCS2B02G357600.2 ... TraesCS2D02G338200.2, TraesCS3A02G113900.2, TraesCS3B02G133400.1, TraesCS3D02G116400.1, TraesCS7A02G134100.1, TraesCS7A02G236500.1, TraesCS7B02G035200.2, TraesCS7B02G134600.1, TraesCS7D02G133500.2, TraesCS7D02G236700.1
Poaceae	Zea mays	8	Zm00001eb033870_P001, Zm00001eb033880_P001 ... Zm00001eb061880_P002, Zm00001eb079430_P001, Zm00001eb079440_P001, Zm00001eb079460_P001, Zm00001eb281720_P002, Zm00001eb303190_P001
Poaceae	Zoysia japonica	5	nbis-gene-15434, nbis-gene-17343, nbis-gene-34827 ... nbis-gene-34829, nbis-gene-7391
Poaceae	Zoysia macrostachya	5	Zma_g21473, Zma_g220, Zma_g24302, Zma_g31434, Zma_g6177
Portulacaceae	Portulaca oleracea	8	evm.TU.LG02.663, evm.TU.LG03.1116, evm.TU.LG07.500 ... evm.TU.LG09.1828, evm.TU.LG12.613, evm.TU.LG15.438, evm.TU.LG16.1616, evm.TU.LG26.51
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g07120, gene.Posoc01g16380, gene.Posoc03g05310 ... gene.Posoc10g04390
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.1179, evm.TU.Scaffold_4_RagTag.2283 ... evm.TU.Scaffold_8_RagTag.1674
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-20073, nbisL1-mrna-6440, nbisL1-mrna-8562 ... nbisL1-mrna-8621
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-3336, nbisL1-mrna-4430, nbisL1-mrna-6613
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-15028, nbisL1-mrna-18833, nbisL1-mrna-5029
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000008l.90, evm.TU.utg000008l.1340 ... evm.TU.utg000009l.531, evm.TU.utg000018l.15
Rhizophoraceae	Kandelia obovata	3	Maker00001228, Maker00003375, Maker00006018
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-10981, nbisL1-mrna-12435, nbisL1-mrna-1842 ... nbisL1-mrna-9356
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-13377, nbisL1-mrna-22313, nbisL1-mrna-23731 ... nbisL1-mrna-5565
Salicaceae	Populus euphratica	8	populus_peu05730, populus_peu10968, populus_peu11104 ... populus_peu17109, populus_peu26111, populus_peu26560, populus_peu26561, populus_peu28757
Solanaceae	Lycium barbarum	3	gene-LOC132603137, gene-LOC132617021, gene-LOC132635303
Solanaceae	Solanum chilense	1	SOLCI000371300
Solanaceae	Solanum pennellii	3	gene-LOC107014380, gene-LOC107025889, gene-LOC107026434
Tamaricaceae	Reaumuria soongarica	3	gene_17901, gene_5154, gene_8082
Tamaricaceae	Tamarix chinensis	4	TC06G0580, TC06G2445, TC08G2555, TC10G1254
Zosteraceae	Zostera marina	2	Zosma03g29000.v3.1, Zosma06g18360.v3.1