Basic Information
Locus ID:
Ag3G01400
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 82328542 | 82329519 | + | Ag3G01400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.60 | 36,609.90 Da | 50.53 | 83.02 | -0.29 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017246488.1 | PREDICTED: probable F-box protein At5g04010 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A165YEN7 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013619 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.136793 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 17.831108 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 62.163658 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 46.688759 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 47.998287 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 117.061096 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 113.864876 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 128.014114 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.108814 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.130225 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.249056 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.038368 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.247416 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.146738 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.151259 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.166618 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.154433 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.188247 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.088689 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.126149 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.058083 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.123797 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.814742 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.313869 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.957236 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.438703 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.845837 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.894856 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.065118 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.06866 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.006397 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.065186 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31353 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4615 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022040 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g062290 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59435, Sbi_jg63212 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23681 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020709 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02821, Sgl07942 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000012518, gene:ENSEOMG00000029847 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0022100, CQ.Regalona.r1.3BG0022810 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30217690 |
| Apiaceae | Apium graveolens | 1 | Ag3G01400 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G004710 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705073 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G01839 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G04010.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10015413m.g.v1.0, Thhalv10015674m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g38750.v2.2 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2543 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031126 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0036750, gene-QOZ80_1BG0086750 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055945 |
| Poaceae | Oryza coarctata | 1 | Oco01G022450 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g58670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G307200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0601733 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr03G018080, Chr08G023720 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G527200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG047540, gene_TRIDC3BG053720 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G330000.1.cds1, TraesCS3B02G360100.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb150670_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31343 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11345 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1267, evm.TU.LG21.899 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6491 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2005 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21092 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13326 |
| Salicaceae | Populus euphratica | 5 | populus_peu09765, populus_peu09768, populus_peu09769 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615835, gene-LOC132615870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001799500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017456 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11865 |