Basic Information
Locus ID:
Ag3G01372
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein ENHANCED DISEASE RESISTANCE 2-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 79837729 | 79855445 | - | Ag3G01372 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 83,130.45 Da | 40.14 | 82.07 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00177 | START | 203 | 372 | 5.88633E-28 | - |
| Pfam | PF01852 | START domain | 229 | 376 | 2.8E-8 | IPR002913 |
| Pfam | PF07059 | Protein of unknown function (DUF1336) | 525 | 730 | 4.6E-71 | IPR009769 |
| SUPERFAMILY | SSF55961 | Bet v1-like | 202 | 372 | 4.4E-28 | - |
| Gene3D | G3DSA:3.30.530.20 | - | 178 | 396 | 8.6E-28 | IPR023393 |
| ProSiteProfiles | PS50848 | START domain profile. | 207 | 368 | 16.125315 | IPR002913 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35180.5 | - | 0 |
| RefSeq | XP_017248010.1 | PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| F4JSE7 | Protein ENHANCED DISEASE RESISTANCE 2 OS=Arabidopsis thaliana OX=3702 GN=EDR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A162AA68 | EDR2_C domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014828 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 24.170406 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 24.009991 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 23.064585 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 23.572266 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 23.52161 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 25.85417 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 20.399303 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.698388 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 43.209373 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 38.011032 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 44.049854 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 43.872967 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 38.059914 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 39.112228 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.862301 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 18.862019 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.14866 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.765194 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.96394 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 12.846804 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.692035 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 22.127405 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 22.548573 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 21.049555 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 17.209476 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.939228 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 15.486592 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 20.452419 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 22.550875 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.562427 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.216298 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.55051 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.79431 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.232549 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.287967 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.936696 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.459029 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.757369 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.807735 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.06587 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.868455 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 14.962103 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.445313 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 9.261158 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 15.353657 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 17.522446 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 17.058458 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 22.893642 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 23.316124 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.23374 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31577 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8914 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah008542, Ah014173 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g192590 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25430, Sbi_jg9273 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19320 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011105 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41844, Sgl46644 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010446, gene:ENSEOMG00000032016 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.8AG0023400, CQ.Regalona.r1.8AG0023410 ... |
| Apiaceae | Apium graveolens | 2 | Ag2G00450, Ag3G01372 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G011910 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719029 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.799.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G13973, Ftri3G13089, Ftri7G22913 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G35180.4 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003438m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g07190.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g018090.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2506 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2643 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g06550 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g20250 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-271 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.165 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000945 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03768, Lb6G31991 |
| Poaceae | Echinochloa crus-galli | 2 | BH08.1726, CH08.1866 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_8AG0632110, gene-QOZ80_8AG0632120 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0470940.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031395, gene-QYE76_032016 |
| Poaceae | Oryza coarctata | 1 | Oco16G008700 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g34060.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G148000 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G015130, Chr17G014600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G297600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG028370, gene_TRIDC5BG029760 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G173000.1, TraesCS5B02G170400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb041240_P001, Zm00001eb041250_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17044, nbis-gene-17049 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24120 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1110, evm.TU.LG05.1653 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g12300 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_10_RagTag.155, evm.TU.Scaffold_4_RagTag.2214 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-13940, nbisL1-mrna-25262, nbisL1-mrna-9713 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13169, nbisL1-mrna-21259 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-16587, nbisL1-mrna-4967, nbisL1-mrna-4968 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.1302, evm.TU.utg000033l.97 |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000049, Maker00001185, Maker00014702 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16672, nbisL1-mrna-1881 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14543, nbisL1-mrna-22252 |
| Salicaceae | Populus euphratica | 1 | populus_peu05640 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603055 |
| Solanaceae | Solanum chilense | 1 | SOLCI000899000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026334 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.12327_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1096 |
| Zosteraceae | Zostera marina | 1 | Zosma03g01770.v3.1 |