halophFGD

Basic Information

Locus ID: Ag3G01367

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Glyco_18

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	79474777	79476243	+	Ag3G01367

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.34	39,264.73 Da	29.09	80.49	-0.03

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd02879	GH18_plant_chitinase_class_V	24	359	9.10933E-142	-
Pfam	PF00704	Glycosyl hydrolases family 18	29	353	2.8E-78	IPR001223
SUPERFAMILY	SSF51445	(Trans)glycosidases	29	354	2.11E-68	IPR017853
SUPERFAMILY	SSF54556	Chitinase insertion domain	258	325	3.8E-12	IPR029070
Gene3D	G3DSA:3.10.50.10	-	257	324	2.2E-115	IPR029070
Gene3D	G3DSA:3.20.20.80	Glycosidases	42	353	2.2E-115	-
SMART	SM00636	2g34	26	353	2.6E-106	IPR011583
ProSiteProfiles	PS51910	Glycosyl hydrolases family 18 (GH18) domain profile.	26	368	72.224655	IPR001223

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process)

Molecular Function:

GO:0008061 (chitin binding)

KEGG Pathway

KO Term:

K01183 (chitinase [EC:3.2.1.14])

Pathway:

ko00520 (Amino sugar and nucleotide sugar metabolism) map00520 (Amino sugar and nucleotide sugar metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Reaction:

R01206 (Chitin + H2O <=> N-Acetyl-D-glucosamine + Chitin) R02334 (Chitin + H2O <=> Chitobiose + Chitin)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G19810.1	Glycosyl hydrolase family protein with chitinase insertion domain.
RefSeq	XP_017246277.1	PREDICTED: chitotriosidase-1-like [Daucus carota subsp. sativus]
Swiss-Prot	O81862	Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1
TrEMBL	A0A165X090	GH18 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014822 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.274222	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	2.411951	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	2.540973	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.705158	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.708955	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	3.165252	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	4.099798	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.650137	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	5.3376	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	5.785223	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	4.131176	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	3.049105	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.670308	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	3.879995	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.035865	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.168245	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.047659	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	19.718258	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	4.672628	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	66.043495	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	90.495949	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	2.972293	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	4.417119	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	3.861171	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	2.269165	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	3.662284	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.786673	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.262627	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.65673	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.616324		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.41557		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.871179		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	23.346901		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	26.222708		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	20.030407		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	72.894897		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.078211		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	44.66058		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	3.547985	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	5.090168	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.495371	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	86.495445	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	4.130951	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.123689	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.63452	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	46.520672	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	1.838707	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.60749	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.192915	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.322503	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg31570, jg31571, jg33012, jg3953, jg3954, jg3955, jg5966
Aizoaceae	Mesembryanthemum crystallinum	4	gene_10561, gene_10562, gene_11464, gene_11465
Amaranthaceae	Atriplex hortensis	2	Ah014680, Ah014681
Amaranthaceae	Beta vulgaris	3	BVRB_6g137090, BVRB_8g197730, BVRB_8g197740
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg25904, Sbi_jg9749
Amaranthaceae	Salicornia europaea	1	Seu_jg18932
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00007703, GOSA_00009651, GOSA_00009652
Amaranthaceae	Suaeda glauca	10	Sgl03951, Sgl41831, Sgl42333, Sgl42371, Sgl46631, Sgl47111 ... Sgl61588, Sgl61589, Sgl63997, Sgl68477
Amaranthaceae	Chenopodium album	11	gene:ENSEOMG00000010159, gene:ENSEOMG00000010529 ... gene:ENSEOMG00000012310, gene:ENSEOMG00000031717, gene:ENSEOMG00000034494, gene:ENSEOMG00000044178, gene:ENSEOMG00000045063, gene:ENSEOMG00000045283, gene:ENSEOMG00000045564, gene:ENSEOMG00000045865, gene:ENSEOMG00000046600
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.8AG0019080, CQ.Regalona.r1.8AG0019090 ... CQ.Regalona.r1.8AG0019100, CQ.Regalona.r1.8BG0023300, CQ.Regalona.r1.8BG0023310, CQ.Regalona.r1.8BG0023320
Anacardiaceae	Pistacia vera	5	pistato.v30179330, pistato.v30179340, pistato.v30250740 ... pistato.v30266070, pistato.v30266080
Apiaceae	Apium graveolens	4	Ag3G01366, Ag3G01367, Ag3G01368, Ag3G01369
Arecaceae	Cocos nucifera	3	COCNU_01G005410, COCNU_01G005420, COCNU_02G014700
Arecaceae	Phoenix dactylifera	8	gene-LOC103697692, gene-LOC103699142, gene-LOC103699734 ... gene-LOC103722003, gene-LOC103724254, gene-LOC120107852, gene-LOC120107853, gene-LOC120107855
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.3359.V1.1, AsparagusV1_09.1203.V1.1
Asteraceae	Flaveria trinervia	5	Ftri15G08896, Ftri15G09246, Ftri15G22617, Ftri16G13925 ... Ftri3G12564
Brassicaceae	Arabidopsis thaliana	9	AT4G19720.1, AT4G19730.1, AT4G19740.1, AT4G19750.1 ... AT4G19760.1, AT4G19770.1, AT4G19800.1, AT4G19810.1, AT4G19820.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10025464m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp7g18320.v2.2
Brassicaceae	Brassica nigra	5	BniB03g022990.2N, BniB03g049020.2N, BniB05g016670.2N ... BniB06g015670.2N, BniB08g040230.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq03G2515, Ceq03G2519, Ceq03G2522, Ceq03G2523, Ceq04G2441
Casuarinaceae	Casuarina glauca	10	Cgl03G2652, Cgl03G2653, Cgl03G2654, Cgl03G2655, Cgl03G2657 ... Cgl03G2658, Cgl03G2659, Cgl03G2663, Cgl03G2664, Cgl04G2667
Dunaliellaceae	Dunaliella salina	1	Dusal.0815s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g21780
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG07.1507
Plantaginaceae	Plantago ovata	3	Pov_00000933, Pov_00000934, Pov_00015564
Plumbaginaceae	Limonium bicolor	11	Lb1G00603, Lb1G01080, Lb1G01764, Lb2G10684, Lb5G28462 ... Lb5G28465, Lb5G28467, Lb5G28468, Lb5G28471, Lb5G28472, Lb5G28622
Poaceae	Echinochloa crus-galli	8	AH04.1219, AH08.640, AH09.727, BH04.1170, BH08.57, BH09.744 ... CH04.1368, CH09.794
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_4AG0321150, gene-QOZ80_4BG0356740 ... gene-QOZ80_9AG0681120
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.2HG0161040.1
Poaceae	Lolium multiflorum	1	gene-QYE76_043475
Poaceae	Oryza coarctata	3	Oco07G003600, Oco08G003780, Oco22G006320
Poaceae	Oryza sativa	2	LOC_Os04g30770.1, LOC_Os11g27400.1
Poaceae	Paspalum vaginatum	2	gene-BS78_05G170700, gene-BS78_06G060100
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0303081
Poaceae	Sporobolus alterniflorus	2	Chr16G007490, Chr25G013020
Poaceae	Thinopyrum elongatum	1	Tel2E01G500600
Poaceae	Triticum dicoccoides	2	gene_TRIDC2AG040390, gene_TRIDC2BG043390
Poaceae	Triticum aestivum	3	TraesCS2A02G279100.1, TraesCS2B02G296600.1 ... TraesCS2D02G278100.1
Poaceae	Zea mays	2	Zm00001eb169950_P002, Zm00001eb420850_P001
Poaceae	Zoysia japonica	3	nbis-gene-38635, nbis-gene-44950, nbis-gene-59271
Poaceae	Zoysia macrostachya	2	Zma_g18789, Zma_g19530
Portulacaceae	Portulaca oleracea	9	evm.TU.LG04.1098, evm.TU.LG04.1099, evm.TU.LG04.1100 ... evm.TU.LG04.1102, evm.TU.LG05.1644, evm.TU.LG05.1645, evm.TU.LG05.1646, evm.TU.LG05.1647, evm.TU.LG26.381
Posidoniaceae	Posidonia oceanica	1	gene.Posoc05g04180
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.51077.2, evm.TU.Scaffold_10_RagTag.146 ... evm.TU.Scaffold_10_RagTag.148, evm.TU.Scaffold_4_RagTag.2204, evm.TU.Scaffold_4_RagTag.2208, evm.TU.Scaffold_4_RagTag.2244
Rhizophoraceae	Carallia pectinifolia	9	nbisL1-mrna-13934, nbisL1-mrna-25267, nbisL1-mrna-25272 ... nbisL1-mrna-25274, nbisL1-mrna-25275, nbisL1-mrna-25277, nbisL1-mrna-25406, nbisL1-mrna-25573, nbisL1-mrna-25575
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-13175, nbisL1-mrna-13177, nbisL1-mrna-21265
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-16581, nbisL1-mrna-4955, nbisL1-mrna-4961
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000008l.478, add.evm.TU.utg000023l.95 ... add.evm.TU.utg000023l.96, evm.TU.utg000008l.1297, evm.TU.utg000033l.92
Rhizophoraceae	Kandelia obovata	4	Maker00000657, Maker00000761, Maker00014825, Maker00018952
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-16677, nbisL1-mrna-17475, nbisL1-mrna-1886 ... nbisL1-mrna-22571
Rhizophoraceae	Rhizophora mangle	11	nbisL1-mrna-14537, nbisL1-mrna-22247, nbisL1-mrna-24717 ... nbisL1-mrna-24718, nbisL1-mrna-24720, nbisL1-mrna-24722, nbisL1-mrna-7819, nbisL1-mrna-9181, nbisL1-mrna-9182, nbisL1-mrna-9184, nbisL1-mrna-9187
Salicaceae	Populus euphratica	8	populus_peu05629, populus_peu05632, populus_peu12262 ... populus_peu12263, populus_peu12270, populus_peu12271, populus_peu12980, populus_peu12982
Solanaceae	Lycium barbarum	8	gene-LOC132601219, gene-LOC132601221, gene-LOC132603028 ... gene-LOC132603035, gene-LOC132603036, gene-LOC132603039, gene-LOC132603041, gene-LOC132603044
Solanaceae	Solanum chilense	3	SOLCI001427900, SOLCI007292800, SOLCI007292900
Solanaceae	Solanum pennellii	3	gene-LOC107024565, gene-LOC107024651, gene-LOC107024706
Tamaricaceae	Reaumuria soongarica	3	STRG.12312_chr02_+, gene_8138, gene_9033
Tamaricaceae	Tamarix chinensis	3	TC10G1110, TC10G1111, TC10G1112
Zosteraceae	Zostera marina	2	Zosma01g04200.v3.1, Zosma04g01580.v3.1