Basic Information
Locus ID:
Ag3G01355
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
conserved protein UCP030365
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 78749891 | 78752030 | + | Ag3G01355 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.85 | 32,215.84 Da | 41.56 | 101.15 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00481 | Protein phosphatase 2C | 70 | 104 | 3.2E-6 | IPR001932 |
| Gene3D | G3DSA:3.60.40.10 | - | 54 | 136 | 1.5E-8 | IPR036457 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05240.2 | - | 0 |
| RefSeq | XP_017257188.1 | PREDICTED: uncharacterized protein LOC108226702 [Daucus carota subsp. sativus] | 0 |
| Q6L5H6 | Protein phosphatase 2C 50 OS=Oryza sativa subsp. japonica OX=39947 GN=PP2C50 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164WZE7 | PHD-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020152 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.74471 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.270109 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.337231 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.856234 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.901632 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.455825 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.477731 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.058472 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.09045 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.106807 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 9.969002 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.599221 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.309077 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.722851 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.116694 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.067601 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.408418 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.98521 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.441039 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.282988 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.183686 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.392488 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.746615 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.412798 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.915786 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.653856 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.106226 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.371056 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.316913 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.929086 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.384471 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.547352 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.032713 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.333033 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.313637 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.889435 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.42481 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.271243 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.410913 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.194397 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.2404 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.597719 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.414296 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.667661 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 6.045566 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.063708 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.995362 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 4.242055 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.745388 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.455054 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg10078, jg14190, jg34082, jg41099 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24381 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032097 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g042420, BVRB_3g062900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30125, Sbi_jg43579 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18323 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004086 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl26187, Sgl66074, Sgl70389 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000019484, gene:ENSEOMG00000052109 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0002880, CQ.Regalona.r1.2BG0004060 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30178050 |
| Apiaceae | Apium graveolens | 4 | Ag10G02719, Ag1G00147, Ag2G02653, Ag3G01355 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G003730, contig69549873G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708983, gene-LOC103721535 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_05.545.V1.1, AsparagusV1_07.528.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G25525, Ftri9G15657 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G40630.1, AT5G05240.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013224m.g.v1.0, Thhalv10016481m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g22960.v2.2, Sp6g37590.v2.2, SpUn1366_0010.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g004730.2N, BniB02g055380.2N, BniB05g029230.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0026 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0028 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g18260, gene.Cymno03g01870 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g02820 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1864 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1694 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011618 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06571 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.291, BH07.385, CH03.4530 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0100770, gene-QOZ80_2BG0154030 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0554280.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G001800, Oco04G001670 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g03940.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G028300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201421 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G035340, Chr0G011460, Chr0G011790, Chr15G026670 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G218500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG012190, gene_TRIDC6BG017510 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G095400.1, TraesCS6B02G123400.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb180710_P001, Zm00001eb191010_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-33793 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12149, Zma_g14902 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.467, evm.TU.LG10.67, evm.TU.LG17.62 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g08690 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.299, evm.TU.Scaffold_4_RagTag.879 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14123, nbisL1-mrna-27461 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12670, nbisL1-mrna-13885 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14268, nbisL1-mrna-1515 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.177, evm.TU.utg000008l.563 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001171, Maker00010210 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14343, nbisL1-mrna-422 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18915, nbisL1-mrna-19357 |
| Salicaceae | Populus euphratica | 1 | populus_peu19156 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132611251 |
| Solanaceae | Solanum chilense | 1 | SOLCI003655800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021085 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24182_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G4494 |
| Zosteraceae | Zostera marina | 2 | Zosma01g36330.v3.1, Zosma01g36340.v3.1 |