Basic Information
Locus ID:
Ag3G01352
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 78406901 | 78414368 | + | Ag3G01352 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.55 | 102,306.91 Da | 54.11 | 69.18 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 85 | 388 | 2.74888E-158 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 87 | 387 | 1.1E-50 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 85 | 389 | 1.28E-87 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 82 | 403 | 3.3E-91 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 86 | 390 | 51.848003 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 87 | 102 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 332 | 350 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 493 | - | - |
| Coils | Coil | Coil | 891 | 911 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57990.1 | ubiquitin-specific protease 23. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_017247289.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 23-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9FPS4 | Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana OX=3702 GN=UBP23 PE=2 SV=2 | 0 | |
| TrEMBL | A0A165X0G2 | Ubiquitin carboxyl-terminal hydrolase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014812 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 27.997761 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 17.962894 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 17.161367 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 19.536596 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 20.468454 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 18.86684 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 19.341904 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 16.493141 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 34.406548 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 34.814987 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 38.719696 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 40.223995 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 37.835697 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 29.018381 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.527887 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 16.018908 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.429426 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 20.501448 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.425839 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 26.798056 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 24.168608 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 21.440374 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 21.666292 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 20.814976 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 22.023184 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 23.388916 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 20.722349 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 18.484032 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 24.334633 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.613986 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 10.894345 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.675174 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.510843 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 10.347422 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.345907 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.732306 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.311394 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.762672 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.688221 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.375754 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.75445 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 29.852983 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 17.466217 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 25.564342 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 18.710508 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 29.774698 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.111927 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 24.343273 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 25.486439 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 26.108852 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg33075 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_15428, gene_8900 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014523 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g164400 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg2724, Sbi_jg35626, Sbi_jg977 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3749 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013587 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl74438, Sgl77993 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006248, gene:ENSEOMG00000035962 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0014080, CQ.Regalona.r1.7BG0015930 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30223730, pistato.v30264940, pistato.v30265910 |
| Apiaceae | Apium graveolens | 2 | Ag2G00422, Ag3G01352 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G005170, COCNU_11G012010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710420, gene-LOC103714240 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1859.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri4G31247, Ftri8G01939 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G57990.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012558m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g19650.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g037260.2N, BniB05g037540.2N, BniB06g045310.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2551 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2691 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g06440 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0152s00016.v1.0, Dusal.0168s00006.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g09510 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.277 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000856 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G04523 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.562, AH07.3773, BH06.617, BH07.3595, CH06.629 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0148890, gene-QOZ80_6AG0511400 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0659030.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_025965, gene-QYE76_028184, gene-QYE76_028185 |
| Poaceae | Oryza coarctata | 4 | Oco03G024190, Oco04G024650, Oco11G003890, Oco12G003920 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g55180.1, LOC_Os06g08530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G066300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0202861, Pt_Chr0405227, Pt_Chr0405248 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr09G017760, Chr11G021420, Chr13G001950, Chr14G002890 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G633900, Tel7E01G300800 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1BG050110, gene_TRIDC6AG053590 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G357500.1, TraesCS6B02G389500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb374670_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-4991, nbis-gene-8432 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14618, Zma_g29239 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1863, evm.TU.LG11.1234 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g12710 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.124 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13912, nbisL1-mrna-25303 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12338, nbisL1-mrna-21281 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16563, nbisL1-mrna-4931 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.1278, evm.TU.utg000033l.79 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000564, Maker00014799 |
| Rhizophoraceae | Rhizophora apiculata | 5 | nbisL1-mrna-13036, nbisL1-mrna-16693, nbisL1-mrna-16694 ... |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14518, nbisL1-mrna-9212 |
| Salicaceae | Populus euphratica | 2 | populus_peu05592, populus_peu12233 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602971 |
| Solanaceae | Solanum chilense | 1 | SOLCI001360100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025806 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_14399, gene_8154 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3923, TC10G1057 |
| Zosteraceae | Zostera marina | 1 | Zosma05g17830.v3.1 |