Basic Information
Locus ID:
Ag3G01341
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein of unknown function (DUF1644)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 74926487 | 74929862 | + | Ag3G01341 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 38,326.85 Da | 56.21 | 64.24 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07800 | Protein of unknown function (DUF1644) | 51 | 216 | 5.0E-70 | IPR012866 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 189 | 3.0E-5 | IPR013083 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68140.2 | Protein of unknown function (DUF1644). | 0 |
| RefSeq | XP_017244006.1 | PREDICTED: uncharacterized protein LOC108215903 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A165X1I5 | BED-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014794 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 22.178194 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 19.62092 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 22.46277 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 21.823708 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 22.022409 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 29.227278 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 23.874966 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 23.810894 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 32.696239 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 34.750774 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 34.422646 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 41.541267 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 32.684261 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 32.709305 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 15.630835 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 15.947894 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 21.866913 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 22.669064 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 19.652437 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 18.329889 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 20.197029 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 33.238895 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 32.615913 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 29.326982 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 30.928953 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 25.0875 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 22.264538 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 22.117329 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 24.034872 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 8.79315 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.367558 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.140257 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 34.758381 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 35.053738 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 33.503338 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 20.573427 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 9.151147 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 13.917249 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 23.848045 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 17.790934 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.227825 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 28.549387 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 28.601984 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 28.524391 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 37.377277 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 24.158081 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 37.54797 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 34.229649 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 43.430771 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 30.939331 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg12144, jg23201, jg26394, jg28417, jg30100 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1517 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g000390 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4095, Sbi_jg49707 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg5548, Seu_jg5549 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022016 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10493, Sgl15740 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013412, gene:ENSEOMG00000035511 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0000440, CQ.Regalona.r1.2BG0028560 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30105680 |
| Apiaceae | Apium graveolens | 4 | Ag3G01341, Ag4G00402, Ag7G02478, Ag9G00693 |
| Arecaceae | Cocos nucifera | 4 | COCNU_02G006560, scaffold001126G000010 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697723, gene-LOC103701838 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1450.V1.1, AsparagusV1_03.2237.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G01319, Ftri15G04707, Ftri3G28024 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G68140.1, AT1G77770.1, AT4G08460.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10008096m.g.v1.0, Thhalv10018839m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g23020.v2.2, Sp5g23140.v2.2, Sp5g32950.v2.2 ... |
| Brassicaceae | Brassica nigra | 8 | BniB03g018170.2N, BniB03g045480.2N, BniB03g057090.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq09G0759, Ceq09G1887 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl09G0819, Cgl09G2064 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g09890 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g13890, gene.Thate06g16670 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8371 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.975, evm.TU.LG08.1292 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002033, Pov_00021754, Pov_00039898 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23354, Lb5G27544 |
| Poaceae | Echinochloa crus-galli | 1 | CH07.3511 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0134630, gene-QOZ80_2AG0147380 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0171810.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_025707, gene-QYE76_044319, gene-QYE76_050559 |
| Poaceae | Oryza coarctata | 4 | Oco03G022890, Oco04G013280, Oco07G007000, Oco14G014570 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g35840.1, LOC_Os02g53110.1, LOC_Os04g37530.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_04G169500, gene-BS78_04G290100, gene-BS78_K155800 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203103, Pt_Chr0700079 |
| Poaceae | Sporobolus alterniflorus | 12 | Chr06G001180, Chr06G009410, Chr09G013810, Chr09G018860 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G554200, Tel3E01G217500, Tel6E01G576900 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG045950, gene_TRIDC2BG048860 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2A02G316100.1.cds1, TraesCS2B02G334300.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb182660_P001, Zm00001eb193480_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18757, nbis-gene-40067, nbis-gene-8574 |
| Poaceae | Zoysia macrostachya | 5 | Zma_g13730, Zma_g14520, Zma_g16515, Zma_g17236, Zma_g21358 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.1956 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g21650 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.718, evm.TU.Scaffold_2_RagTag.1599 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18790, nbisL1-mrna-3692 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-14845, nbisL1-mrna-20410, nbisL1-mrna-6610 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-18985, nbisL1-mrna-5769, nbisL1-mrna-6876 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000002l.316, add.evm.TU.utg000009l.115 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00010454, Maker00011374 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-17824, nbisL1-mrna-17825, nbisL1-mrna-20015 ... |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-21815, nbisL1-mrna-870, nbisL1-mrna-9888 |
| Salicaceae | Populus euphratica | 4 | populus_peu02548, populus_peu14683, populus_peu32356 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598731, gene-LOC132616549 |
| Solanaceae | Solanum chilense | 2 | SOLCI002790600, SOLCI004537300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008067, gene-LOC107026387 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.26414_chr11_-, STRG.9632_chr06_- |
| Tamaricaceae | Tamarix chinensis | 3 | TC03G2281, TC05G0935, TC09G1841 |
| Zosteraceae | Zostera marina | 3 | Zosma01g19500.v3.1, Zosma02g16940.v3.1, Zosma03g20150.v3.1 |